Difference between revisions of "TSS:Hg 101900.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=154 |entrez_id=5774 |gc_percent=0.492537 |gene_alias=PTP-H1|PTPH1 |gene_description="protein tyrosine phosphatase, non-receptor...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PTPH1= | ||
| + | |all_trans=AK296265:58 AK316118:-75 AK296388:-75 NM_001145372:-149 NM_001145371:-149 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=58 | ||
|distance_to_tss=154 | |distance_to_tss=154 | ||
| + | |end=109428894 | ||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
|gene_alias=PTP-H1|PTPH1 | |gene_alias=PTP-H1|PTPH1 | ||
|gene_description="protein tyrosine phosphatase, non-receptor type 3" | |gene_description="protein tyrosine phosphatase, non-receptor type 3" | ||
| − | |gene_name=PTPN3 | + | |gene_id=5774 |
| + | |gene_name="protein tyrosine phosphatase, non-receptor type 3" | ||
| + | |gene_source=HGNC:9655 | ||
| + | |gene_symbol=PTPN3 | ||
| + | |gene_synonyms=PTPH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9655 | ||
|nearest_ensembl=ENSG00000070159 | |nearest_ensembl=ENSG00000070159 | ||
|nearest_promoter_id=NM_001145371 | |nearest_promoter_id=NM_001145371 | ||
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=109428883 | ||
| + | |strand=- | ||
|tata_box="-34(TTATTTAAAAGC,-,0.00)" | |tata_box="-34(TTATTTAAAAGC,-,0.00)" | ||
| + | |transcript_name=AK296265 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101900.1 | |tss_id=hg_101900.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z3R0 | ||
}} | }} | ||
Revision as of 19:03, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK296265 |
|---|---|
| Distance: | 58 |
| Num_trans: | 5 |
| All_trans: | AK296265:58 AK316118:-75 AK296388:-75 NM_001145372:-149 NM_001145371:-149 |
TATA-Box annotation
| Distance to TSS: | 154 |
|---|---|
| Nearest PromoterID: | NM_001145371 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | "protein tyrosine phosphatase, non-receptor type 3" |
| Gene Alias: | PTP-H1 |
| Gene Description: | "protein tyrosine phosphatase, non-receptor type 3" |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(TTATTTAAAAGC,-,0.00)" |
