Difference between revisions of "TSS:Hg 101906.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.18 |distance_to_tss=65 |entrez_id=5774 |gc_percent=0.825871 |gene_alias=PTP-H1|PTPH1 |gene_description="protein tyrosine phosphatase, non-receptor t...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PTPH1= | ||
| + | |all_trans=BC063287:-37 ENST00000374541.3:-57 uc004bed.3:-57 AK295875:-59 ENST00000262539.7:-64 NM_001145368:-64 NM_002829:-64 uc010mtu.3:-64 AK316066:-64 AK304434:-64 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.18 | |cpg_percent=0.18 | ||
| + | |distance=-37 | ||
|distance_to_tss=65 | |distance_to_tss=65 | ||
| + | |end=109498249 | ||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.825871 | |gc_percent=0.825871 | ||
|gene_alias=PTP-H1|PTPH1 | |gene_alias=PTP-H1|PTPH1 | ||
|gene_description="protein tyrosine phosphatase, non-receptor type 3" | |gene_description="protein tyrosine phosphatase, non-receptor type 3" | ||
| − | |gene_name=PTPN3 | + | |gene_id=5774 |
| + | |gene_name="protein tyrosine phosphatase, non-receptor type 3" | ||
| + | |gene_source=HGNC:9655 | ||
| + | |gene_symbol=PTPN3 | ||
| + | |gene_synonyms=PTPH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9655 | ||
|nearest_ensembl=ENSG00000070159 | |nearest_ensembl=ENSG00000070159 | ||
|nearest_promoter_id=NM_002829 | |nearest_promoter_id=NM_002829 | ||
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=109498246 | ||
| + | |strand=- | ||
| + | |transcript_name=BC063287 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101906.1 | |tss_id=hg_101906.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:03, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC063287 |
|---|---|
| Distance: | -37 |
| Num_trans: | 10 |
| All_trans: | BC063287:-37 ENST00000374541.3:-57 uc004bed.3:-57 AK295875:-59 ENST00000262539.7:-64 NM_001145368:-64 NM_002829:-64 uc010mtu.3:-64 AK316066:-64 AK304434:-64 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NM_002829 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | "protein tyrosine phosphatase, non-receptor type 3" |
| Gene Alias: | PTP-H1 |
| Gene Description: | "protein tyrosine phosphatase, non-receptor type 3" |
| Gene Type: | protein-coding |
| CpG%: | 0.18 |
| GC%: | 0.825871 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
