Difference between revisions of "TSS:Hg 102078.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=37 |entrez_id=57864 |gc_percent=0.726368 |gene_alias=Ly110|TSCOT |gene_description=solute carrier family 46 member 2 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TSCOT= | ||
| + | |all_trans=AK055571:0 ENST00000374228.4:-30 NM_033051:-30 uc004bgk.3:-30 AF242557:-30 AK314414:51 ENST00000491462.2:59 uc064vcx.1:59 BC048285:104 HQ448607:187 KJ899379:187 CU690566:187 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=37 | |distance_to_tss=37 | ||
| + | |end=112890883 | ||
|entrez_id=57864 | |entrez_id=57864 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
|gene_alias=Ly110|TSCOT | |gene_alias=Ly110|TSCOT | ||
|gene_description=solute carrier family 46 member 2 | |gene_description=solute carrier family 46 member 2 | ||
| − | |gene_name=SLC46A2 | + | |gene_id=57864 |
| + | |gene_name=solute carrier family 46 member 2 | ||
| + | |gene_source=HGNC:16055 | ||
| + | |gene_symbol=SLC46A2 | ||
| + | |gene_synonyms=Ly110 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16055 | ||
|nearest_ensembl=ENSG00000119457 | |nearest_ensembl=ENSG00000119457 | ||
|nearest_promoter_id=NM_033051 | |nearest_promoter_id=NM_033051 | ||
|nearest_refseq=NM_033051 | |nearest_refseq=NM_033051 | ||
|nearest_unigene=Hs.512668 | |nearest_unigene=Hs.512668 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=112890868 | ||
| + | |strand=- | ||
|tata_box="-62(CCTTTTCTGGCC,+,0.00)" | |tata_box="-62(CCTTTTCTGGCC,+,0.00)" | ||
| + | |transcript_name=AK055571 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102078.1 | |tss_id=hg_102078.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:11, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK055571 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | AK055571:0 ENST00000374228.4:-30 NM_033051:-30 uc004bgk.3:-30 AF242557:-30 AK314414:51 ENST00000491462.2:59 uc064vcx.1:59 BC048285:104 HQ448607:187 KJ899379:187 CU690566:187 |
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NM_033051 |
| Entrez ID: | 57864 |
| Nearest Unigene: | Hs.512668 |
| Nearest Refseq: | NM_033051 |
| Nearest Ensembl: | ENSG00000119457 |
| Gene Name: | solute carrier family 46 member 2 |
| Gene Alias: | Ly110 |
| Gene Description: | solute carrier family 46 member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-62(CCTTTTCTGGCC,+,0.00)" |
