Difference between revisions of "TSS:Hg 102110.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=-32 |entrez_id=257169 |gc_percent=0.661692 |gene_alias=- |gene_description=chromosome 9 open reading frame 43 |gene_name=C9orf4...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000374171.4:-53 uc004bhn.4:-53 AK074762:-53 NR_027261:-56 NM_017443:-130 NM_001278255:-130 ENST00000374169.7:224 uc011lxg.3:224 AK074629:224 AK096050:229 AK074782:232 BC003166:242 BC004170:242 ENST00000475080.1:256 uc064vei.1:256 ENST00000479871.1:263 uc064veh.1:263 AK092840:263 AF226077:313 AY720898:313 JF432738:313 KJ894010:313 AB527738:313 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=-53 | ||
|distance_to_tss=-32 | |distance_to_tss=-32 | ||
| + | |end=113410619 | ||
|entrez_id=257169 | |entrez_id=257169 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=chromosome 9 open reading frame 43 | |gene_description=chromosome 9 open reading frame 43 | ||
| − | |gene_name= | + | |gene_id=54107 |
| + | |gene_name="polymerase (DNA) epsilon 3, accessory subunit" | ||
| + | |gene_source=HGNC:13546 | ||
| + | |gene_symbol=POLE3 | ||
| + | |gene_synonyms=CHARAC17 CHRAC17 Ybl1 p17 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:13546 | ||
|nearest_ensembl=ENSG00000157653 | |nearest_ensembl=ENSG00000157653 | ||
|nearest_promoter_id=NM_001278629 | |nearest_promoter_id=NM_001278629 | ||
|nearest_refseq=NM_152786 | |nearest_refseq=NM_152786 | ||
|nearest_unigene=Hs.632691 | |nearest_unigene=Hs.632691 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=113410605 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000374171.4 uc004bhn.4 AK074762 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102110.1 | |tss_id=hg_102110.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R829 Q9NRF9 | ||
}} | }} | ||
Revision as of 19:12, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000374171.4 uc004bhn.4 AK074762 |
|---|---|
| Distance: | -53 |
| Num_trans: | 23 |
| All_trans: | ENST00000374171.4:-53 uc004bhn.4:-53 AK074762:-53 NR_027261:-56 NM_017443:-130 NM_001278255:-130 ENST00000374169.7:224 uc011lxg.3:224 AK074629:224 AK096050:229 AK074782:232 BC003166:242 BC004170:242 ENST00000475080.1:256 uc064vei.1:256 ENST00000479871.1:263 uc064veh.1:263 AK092840:263 AF226077:313 AY720898:313 JF432738:313 KJ894010:313 AB527738:313 |
TATA-Box annotation
| Distance to TSS: | -32 |
|---|---|
| Nearest PromoterID: | NM_001278629 |
| Entrez ID: | 257169 |
| Nearest Unigene: | Hs.632691 |
| Nearest Refseq: | NM_152786 |
| Nearest Ensembl: | ENSG00000157653 |
| Gene Name: | "polymerase (DNA) epsilon 3, accessory subunit" |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 43 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
