Difference between revisions of "TSS:Hg 102164.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-841 |entrez_id=25861 |gc_percent=0.427861 |gene_alias=CIP98|DFNB31|PDZD7B|USH2D|WI |gene_description=whirlin |gene_name=WHRN |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DFNB31= | ||
| + | |PDZD7B= | ||
| + | |USH2D= | ||
| + | |WI= | ||
| + | |all_trans=ENST00000480518.1:-281 uc064vge.1:-281 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=-281 | ||
|distance_to_tss=-841 | |distance_to_tss=-841 | ||
| + | |end=114504058 | ||
|entrez_id=25861 | |entrez_id=25861 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
|gene_alias=CIP98|DFNB31|PDZD7B|USH2D|WI | |gene_alias=CIP98|DFNB31|PDZD7B|USH2D|WI | ||
|gene_description=whirlin | |gene_description=whirlin | ||
| − | |gene_name=WHRN | + | |gene_id=25861 |
| + | |gene_name="deafness, autosomal recessive 31" | ||
| + | |gene_source=HGNC:16361 | ||
| + | |gene_symbol=DFNB31 | ||
| + | |gene_synonyms=CIP98 PDZD7B USH2D WHRN | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16361 | ||
|nearest_ensembl=ENSG00000095397 | |nearest_ensembl=ENSG00000095397 | ||
|nearest_promoter_id=NM_001083885 | |nearest_promoter_id=NM_001083885 | ||
|nearest_refseq=NM_015404 | |nearest_refseq=NM_015404 | ||
|nearest_unigene=Hs.93836 | |nearest_unigene=Hs.93836 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=114504053 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000480518.1 uc064vge.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102164.1 | |tss_id=hg_102164.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:14, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000480518.1 uc064vge.1 |
|---|---|
| Distance: | -281 |
| Num_trans: | 2 |
| All_trans: | ENST00000480518.1:-281 uc064vge.1:-281 |
TATA-Box annotation
| Distance to TSS: | -841 |
|---|---|
| Nearest PromoterID: | NM_001083885 |
| Entrez ID: | 25861 |
| Nearest Unigene: | Hs.93836 |
| Nearest Refseq: | NM_015404 |
| Nearest Ensembl: | ENSG00000095397 |
| Gene Name: | "deafness, autosomal recessive 31" |
| Gene Alias: | CIP98 |
| Gene Description: | whirlin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
