Difference between revisions of "TSS:Hg 102223.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=52 |entrez_id=3371 |gc_percent=0.577114 |gene_alias=150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C |gene_description=tenascin C |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DFNA56= | ||
| + | |GMEM= | ||
| + | |GP= | ||
| + | |HXB= | ||
| + | |JI= | ||
| + | |TN= | ||
| + | |TN-C= | ||
| + | |all_trans=ENST00000534839.1:0 uc064vgz.1:0 X78565:39 ENST00000535648.5:-45 ENST00000350763.8:-45 NM_002160:-45 uc022bmj.2:-45 uc004bjj.6:-45 AK304015:46 AB210038:66 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| + | |distance=0 | ||
|distance_to_tss=52 | |distance_to_tss=52 | ||
| + | |end=115118212 | ||
|entrez_id=3371 | |entrez_id=3371 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
|gene_alias=150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C | |gene_alias=150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C | ||
|gene_description=tenascin C | |gene_description=tenascin C | ||
| − | |gene_name=TNC | + | |gene_id=3371 |
| + | |gene_name=tenascin C | ||
| + | |gene_source=HGNC:5318 | ||
| + | |gene_symbol=TNC | ||
| + | |gene_synonyms=MGC167029 TN | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5318 | ||
|nearest_ensembl=ENSG00000041982 | |nearest_ensembl=ENSG00000041982 | ||
|nearest_promoter_id=NM_002160 | |nearest_promoter_id=NM_002160 | ||
|nearest_refseq=NM_002160 | |nearest_refseq=NM_002160 | ||
|nearest_unigene=Hs.143250 | |nearest_unigene=Hs.143250 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=115118198 | ||
| + | |strand=- | ||
|tata_box="16(CGCTATATAAGC,-,0.00)" | |tata_box="16(CGCTATATAAGC,-,0.00)" | ||
| + | |transcript_name=ENST00000534839.1 uc064vgz.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102223.1 | |tss_id=hg_102223.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F5H5D6 | ||
}} | }} | ||
Revision as of 19:17, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000534839.1 uc064vgz.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000534839.1:0 uc064vgz.1:0 X78565:39 ENST00000535648.5:-45 ENST00000350763.8:-45 NM_002160:-45 uc022bmj.2:-45 uc004bjj.6:-45 AK304015:46 AB210038:66 |
TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NM_002160 |
| Entrez ID: | 3371 |
| Nearest Unigene: | Hs.143250 |
| Nearest Refseq: | NM_002160 |
| Nearest Ensembl: | ENSG00000041982 |
| Gene Name: | tenascin C |
| Gene Alias: | 150-225 |
| Gene Description: | tenascin C |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "16(CGCTATATAAGC,-,0.00)" |
