Difference between revisions of "TSS:Hg 102295.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=39 |entrez_id=55755 |gc_percent=0.701493 |gene_alias=C48|Cep215|MCPH3 |gene_description=CDK5 regulatory subunit associated prot...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Cep215= | ||
| + | |MCPH3= | ||
| + | |all_trans=BC146782:-3 AB046853:-3 BC019577:-4 AF448860:6 BX537421:-18 ENST00000349780.8:-22 ENST00000360190.8:-22 uc004bkf.5:-22 uc004bkg.5:-22 AL833481:-22 BX537759:-22 AK122913:-23 BX537708:-23 ENST00000360822.7:-34 ENST00000491334.1:-34 NM_001272039:-34 NM_001011649:-34 NR_073554:-34 NR_073557:-34 NM_018249:-34 NR_073558:-34 NR_073555:-34 NR_073556:-34 uc004bkh.2:-34 uc064viw.1:-34 KP294527:-34 ENST00000481266.1:65 uc064viv.1:65 ENST00000473282.6:121 ENST00000480112.5:121 uc064vij.1:121 uc064vik.1:121 BC136275:121 BC143732:121 BC143734:121 BC143755:121 BC143760:121 BC143762:121 BC143753:121 BC143764:121 AB489151:145 DQ581824:149 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=-3 | ||
|distance_to_tss=39 | |distance_to_tss=39 | ||
| + | |end=120580136 | ||
|entrez_id=55755 | |entrez_id=55755 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
|gene_alias=C48|Cep215|MCPH3 | |gene_alias=C48|Cep215|MCPH3 | ||
|gene_description=CDK5 regulatory subunit associated protein 2 | |gene_description=CDK5 regulatory subunit associated protein 2 | ||
| − | |gene_name=CDK5RAP2 | + | |gene_id=55755 |
| + | |gene_name=CDK5 regulatory subunit associated protein 2 | ||
| + | |gene_source=HGNC:18672 | ||
| + | |gene_symbol=CDK5RAP2 | ||
| + | |gene_synonyms=C48 CEP215 FLJ10867 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18672 | ||
|nearest_ensembl=ENSG00000136861 | |nearest_ensembl=ENSG00000136861 | ||
|nearest_promoter_id=NR_073558 | |nearest_promoter_id=NR_073558 | ||
|nearest_refseq=NM_018249 | |nearest_refseq=NM_018249 | ||
|nearest_unigene=Hs.269560 | |nearest_unigene=Hs.269560 | ||
| + | |num_trans=42 | ||
| + | |species=human | ||
| + | |start=120580125 | ||
| + | |strand=- | ||
| + | |transcript_name=BC146782 AB046853 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102295.1 | |tss_id=hg_102295.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:20, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC146782 AB046853 |
|---|---|
| Distance: | -3 |
| Num_trans: | 42 |
| All_trans: | BC146782:-3 AB046853:-3 BC019577:-4 AF448860:6 BX537421:-18 ENST00000349780.8:-22 ENST00000360190.8:-22 uc004bkf.5:-22 uc004bkg.5:-22 AL833481:-22 BX537759:-22 AK122913:-23 BX537708:-23 ENST00000360822.7:-34 ENST00000491334.1:-34 NM_001272039:-34 NM_001011649:-34 NR_073554:-34 NR_073557:-34 NM_018249:-34 NR_073558:-34 NR_073555:-34 NR_073556:-34 uc004bkh.2:-34 uc064viw.1:-34 KP294527:-34 ENST00000481266.1:65 uc064viv.1:65 ENST00000473282.6:121 ENST00000480112.5:121 uc064vij.1:121 uc064vik.1:121 BC136275:121 BC143732:121 BC143734:121 BC143755:121 BC143760:121 BC143762:121 BC143753:121 BC143764:121 AB489151:145 DQ581824:149 |
TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NR_073558 |
| Entrez ID: | 55755 |
| Nearest Unigene: | Hs.269560 |
| Nearest Refseq: | NM_018249 |
| Nearest Ensembl: | ENSG00000136861 |
| Gene Name: | CDK5 regulatory subunit associated protein 2 |
| Gene Alias: | C48 |
| Gene Description: | CDK5 regulatory subunit associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
