Difference between revisions of "TSS:Hg 102296.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=13 |entrez_id=55755 |gc_percent=0.656716 |gene_alias=C48|Cep215|MCPH3 |gene_description=CDK5 regulatory subunit associated prot...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Cep215= | ||
| + | |MCPH3= | ||
| + | |all_trans=ENST00000360822.7:0 ENST00000349780.8:0 ENST00000360190.8:0 ENST00000491334.1:0 NM_001272039:0 NM_001011649:0 NR_073554:0 NR_073557:0 NM_018249:0 NR_073558:0 NR_073555:0 NR_073556:0 uc004bkh.2:0 uc004bkf.5:0 uc004bkg.5:0 uc064viw.1:0 KP294527:0 BC146782:0 AL833481:0 AB046853:0 BX537759:0 AK122913:0 BX537421:0 BX537708:0 BC019577:0 AF448860:18 ENST00000481266.1:77 uc064viv.1:77 ENST00000473282.6:133 ENST00000480112.5:133 uc064vij.1:133 uc064vik.1:133 BC136275:133 BC143732:133 BC143734:133 BC143755:133 BC143760:133 BC143762:133 BC143753:133 BC143764:133 AB489151:157 DQ581824:161 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=13 | |distance_to_tss=13 | ||
| + | |end=120580177 | ||
|entrez_id=55755 | |entrez_id=55755 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=C48|Cep215|MCPH3 | |gene_alias=C48|Cep215|MCPH3 | ||
|gene_description=CDK5 regulatory subunit associated protein 2 | |gene_description=CDK5 regulatory subunit associated protein 2 | ||
| − | |gene_name=CDK5RAP2 | + | |gene_id=55755 |
| + | |gene_name=CDK5 regulatory subunit associated protein 2 | ||
| + | |gene_source=HGNC:18672 | ||
| + | |gene_symbol=CDK5RAP2 | ||
| + | |gene_synonyms=C48 CEP215 FLJ10867 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18672 | ||
|nearest_ensembl=ENSG00000136861 | |nearest_ensembl=ENSG00000136861 | ||
|nearest_promoter_id=NR_073558 | |nearest_promoter_id=NR_073558 | ||
|nearest_refseq=NM_018249 | |nearest_refseq=NM_018249 | ||
|nearest_unigene=Hs.269560 | |nearest_unigene=Hs.269560 | ||
| + | |num_trans=42 | ||
| + | |species=human | ||
| + | |start=120580137 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000360822.7 ENST00000349780.8 ENST00000360190.8 ENST00000491334.1 NM_001272039 NM_001011649 NR_073554 NR_073557 NM_018249 NR_073558 NR_073555 NR_073556 uc004bkh.2 uc004bkf.5 uc004bkg.5 uc064viw.1 KP294527 BC146782 AL833481 AB046853 BX537759 AK122913 BX537421 BX537708 BC019577 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102296.1 | |tss_id=hg_102296.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0A0MRG9 A0A0C4ZLW1 B3KVI2 Q05CZ3 Q7Z3M0 Q96SN8 | ||
}} | }} | ||
Revision as of 19:20, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000360822.7 ENST00000349780.8 ENST00000360190.8 ENST00000491334.1 NM_001272039 NM_001011649 NR_073554 NR_073557 NM_018249 NR_073558 NR_073555 NR_073556 uc004bkh.2 uc004bkf.5 uc004bkg.5 uc064viw.1 KP294527 BC146782 AL833481 AB046853 BX537759 AK122913 BX537421 BX537708 BC019577 |
|---|---|
| Distance: | 0 |
| Num_trans: | 42 |
| All_trans: | ENST00000360822.7:0 ENST00000349780.8:0 ENST00000360190.8:0 ENST00000491334.1:0 NM_001272039:0 NM_001011649:0 NR_073554:0 NR_073557:0 NM_018249:0 NR_073558:0 NR_073555:0 NR_073556:0 uc004bkh.2:0 uc004bkf.5:0 uc004bkg.5:0 uc064viw.1:0 KP294527:0 BC146782:0 AL833481:0 AB046853:0 BX537759:0 AK122913:0 BX537421:0 BX537708:0 BC019577:0 AF448860:18 ENST00000481266.1:77 uc064viv.1:77 ENST00000473282.6:133 ENST00000480112.5:133 uc064vij.1:133 uc064vik.1:133 BC136275:133 BC143732:133 BC143734:133 BC143755:133 BC143760:133 BC143762:133 BC143753:133 BC143764:133 AB489151:157 DQ581824:161 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NR_073558 |
| Entrez ID: | 55755 |
| Nearest Unigene: | Hs.269560 |
| Nearest Refseq: | NM_018249 |
| Nearest Ensembl: | ENSG00000136861 |
| Gene Name: | CDK5 regulatory subunit associated protein 2 |
| Gene Alias: | C48 |
| Gene Description: | CDK5 regulatory subunit associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
