Difference between revisions of "TSS:Hg 102323.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=1181 |entrez_id=7185 |gc_percent=0.577114 |gene_alias=EBI6|MGC:10353 |gene_description=TNF receptor associated factor 1 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MGC:10353= | ||
| + | |all_trans=BT019408:-349 HQ447750:-349 KJ897703:-349 AB590501:-349 CU692854:-349 U19261:-424 BC024145:-427 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=-349 | ||
|distance_to_tss=1181 | |distance_to_tss=1181 | ||
| + | |end=120925726 | ||
|entrez_id=7185 | |entrez_id=7185 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
|gene_alias=EBI6|MGC:10353 | |gene_alias=EBI6|MGC:10353 | ||
|gene_description=TNF receptor associated factor 1 | |gene_description=TNF receptor associated factor 1 | ||
| − | |gene_name=TRAF1 | + | |gene_id=7185 |
| + | |gene_name=TNF receptor associated factor 1 | ||
| + | |gene_source=HGNC:12031 | ||
| + | |gene_symbol=TRAF1 | ||
| + | |gene_synonyms=EBI6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12031 | ||
|nearest_ensembl=ENSG00000056558 | |nearest_ensembl=ENSG00000056558 | ||
|nearest_promoter_id=NM_005658 | |nearest_promoter_id=NM_005658 | ||
|nearest_refseq=NM_005658 | |nearest_refseq=NM_005658 | ||
|nearest_unigene=Hs.531251 | |nearest_unigene=Hs.531251 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=120925702 | ||
| + | |strand=- | ||
| + | |transcript_name=BT019408 HQ447750 KJ897703 AB590501 CU692854 | ||
| + | |tss_classification=no | ||
|tss_id=hg_102323.1 | |tss_id=hg_102323.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:21, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BT019408 HQ447750 KJ897703 AB590501 CU692854 |
|---|---|
| Distance: | -349 |
| Num_trans: | 7 |
| All_trans: | BT019408:-349 HQ447750:-349 KJ897703:-349 AB590501:-349 CU692854:-349 U19261:-424 BC024145:-427 |
TATA-Box annotation
| Distance to TSS: | 1181 |
|---|---|
| Nearest PromoterID: | NM_005658 |
| Entrez ID: | 7185 |
| Nearest Unigene: | Hs.531251 |
| Nearest Refseq: | NM_005658 |
| Nearest Ensembl: | ENSG00000056558 |
| Gene Name: | TNF receptor associated factor 1 |
| Gene Alias: | EBI6 |
| Gene Description: | TNF receptor associated factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
