Difference between revisions of "TSS:Hg 102328.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=129 |entrez_id=7185 |gc_percent=0.766169 |gene_alias=EBI6|MGC:10353 |gene_description=TNF receptor associated factor 1 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MGC:10353= | ||
| + | |all_trans=ENST00000540010.1:-89 NM_001190945:-89 uc010mvl.2:-89 AK315476:-117 ENST00000373887.7:235 uc004bku.3:235 AL832989:235 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=-89 | ||
|distance_to_tss=129 | |distance_to_tss=129 | ||
| + | |end=120929084 | ||
|entrez_id=7185 | |entrez_id=7185 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
|gene_alias=EBI6|MGC:10353 | |gene_alias=EBI6|MGC:10353 | ||
|gene_description=TNF receptor associated factor 1 | |gene_description=TNF receptor associated factor 1 | ||
| − | |gene_name=TRAF1 | + | |gene_id=7185 |
| + | |gene_name=TNF receptor associated factor 1 | ||
| + | |gene_source=HGNC:12031 | ||
| + | |gene_symbol=TRAF1 | ||
| + | |gene_synonyms=EBI6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12031 | ||
|nearest_ensembl=ENSG00000056558 | |nearest_ensembl=ENSG00000056558 | ||
|nearest_promoter_id=NM_001190945 | |nearest_promoter_id=NM_001190945 | ||
|nearest_refseq=NM_005658 | |nearest_refseq=NM_005658 | ||
|nearest_unigene=Hs.531251 | |nearest_unigene=Hs.531251 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=120929003 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000540010.1 NM_001190945 uc010mvl.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102328.1 | |tss_id=hg_102328.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q13077 | ||
}} | }} | ||
Revision as of 19:21, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000540010.1 NM_001190945 uc010mvl.2 |
|---|---|
| Distance: | -89 |
| Num_trans: | 7 |
| All_trans: | ENST00000540010.1:-89 NM_001190945:-89 uc010mvl.2:-89 AK315476:-117 ENST00000373887.7:235 uc004bku.3:235 AL832989:235 |
TATA-Box annotation
| Distance to TSS: | 129 |
|---|---|
| Nearest PromoterID: | NM_001190945 |
| Entrez ID: | 7185 |
| Nearest Unigene: | Hs.531251 |
| Nearest Refseq: | NM_005658 |
| Nearest Ensembl: | ENSG00000056558 |
| Gene Name: | TNF receptor associated factor 1 |
| Gene Alias: | EBI6 |
| Gene Description: | TNF receptor associated factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
