Difference between revisions of "TSS:Hg 102353.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=23 |entrez_id=2040 |gc_percent=0.686567 |gene_alias=BND7|EPB7|EPB72 |gene_description=stomatin |gene_name=STOM |gene_type=prote...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |EPB7= | ||
| + | |EPB72= | ||
| + | |all_trans=ENST00000538954.5:-18 NM_001270527:-18 NM_004099:-18 NM_001270526:-18 NM_198194:-18 NR_073037:-18 uc064vlh.1:-18 ENST00000347359.3:23 uc004bli.5:23 AK302977:24 AK304518:28 AK304449:28 AK307999:29 BC010703:50 ENST00000286713.6:71 uc004blh.5:71 M81635:71 CU679799:87 DQ891058:88 KJ896772:88 DQ894236:88 AB528375:88 X60067:89 CR542100:89 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| + | |distance=-18 | ||
|distance_to_tss=23 | |distance_to_tss=23 | ||
| + | |end=121370286 | ||
|entrez_id=2040 | |entrez_id=2040 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
|gene_alias=BND7|EPB7|EPB72 | |gene_alias=BND7|EPB7|EPB72 | ||
|gene_description=stomatin | |gene_description=stomatin | ||
| − | |gene_name=STOM | + | |gene_id=2040 |
| + | |gene_name=stomatin | ||
| + | |gene_source=HGNC:3383 | ||
| + | |gene_symbol=STOM | ||
| + | |gene_synonyms=BND7 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3383 | ||
|nearest_ensembl=ENSG00000148175 | |nearest_ensembl=ENSG00000148175 | ||
|nearest_promoter_id=NR_073037 | |nearest_promoter_id=NR_073037 | ||
|nearest_refseq=NM_004099 | |nearest_refseq=NM_004099 | ||
|nearest_unigene=Hs.253903 | |nearest_unigene=Hs.253903 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=121370275 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000538954.5 NM_001270527 NM_004099 NM_001270526 NM_198194 NR_073037 uc064vlh.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102353.1 | |tss_id=hg_102353.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F8VSL7 P27105 | ||
}} | }} | ||
Revision as of 19:22, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000538954.5 NM_001270527 NM_004099 NM_001270526 NM_198194 NR_073037 uc064vlh.1 |
|---|---|
| Distance: | -18 |
| Num_trans: | 24 |
| All_trans: | ENST00000538954.5:-18 NM_001270527:-18 NM_004099:-18 NM_001270526:-18 NM_198194:-18 NR_073037:-18 uc064vlh.1:-18 ENST00000347359.3:23 uc004bli.5:23 AK302977:24 AK304518:28 AK304449:28 AK307999:29 BC010703:50 ENST00000286713.6:71 uc004blh.5:71 M81635:71 CU679799:87 DQ891058:88 KJ896772:88 DQ894236:88 AB528375:88 X60067:89 CR542100:89 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NR_073037 |
| Entrez ID: | 2040 |
| Nearest Unigene: | Hs.253903 |
| Nearest Refseq: | NM_004099 |
| Nearest Ensembl: | ENSG00000148175 |
| Gene Name: | stomatin |
| Gene Alias: | BND7 |
| Gene Description: | stomatin |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
