Difference between revisions of "TSS:Hg 102390.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=-134 |entrez_id=26468 |gc_percent=0.756219 |gene_alias=LHX6.1 |gene_description=LIM homeobox 6 |gene_name=LHX6 |gene_type=protei...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000340587.7:0 uc004bly.5:0 ENST00000394319.8:81 uc004blx.5:81 AK299709:81 NM_199160:114 NM_014368:114 AL136570:221 BC103936:255 BC103937:255 BC103938:255 ENST00000560485.1:495 uc064vmi.1:495 ENST00000541397.2:498 NM_001242333:498 uc022bmx.2:498 AK297175:498 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=0 | ||
|distance_to_tss=-134 | |distance_to_tss=-134 | ||
| + | |end=122228967 | ||
|entrez_id=26468 | |entrez_id=26468 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
|gene_alias=LHX6.1 | |gene_alias=LHX6.1 | ||
|gene_description=LIM homeobox 6 | |gene_description=LIM homeobox 6 | ||
| − | |gene_name=LHX6 | + | |gene_id=26468 |
| + | |gene_name=LIM homeobox 6 | ||
| + | |gene_source=HGNC:21735 | ||
| + | |gene_symbol=LHX6 | ||
| + | |gene_synonyms=LHX6.1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:21735 | ||
|nearest_ensembl=ENSG00000106852 | |nearest_ensembl=ENSG00000106852 | ||
|nearest_promoter_id=NM_199160 | |nearest_promoter_id=NM_199160 | ||
|nearest_refseq=NM_014368 | |nearest_refseq=NM_014368 | ||
|nearest_unigene=Hs.103137 | |nearest_unigene=Hs.103137 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=122228925 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000340587.7 uc004bly.5 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102390.1 | |tss_id=hg_102390.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9UPM6 | ||
}} | }} | ||
Revision as of 19:24, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000340587.7 uc004bly.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000340587.7:0 uc004bly.5:0 ENST00000394319.8:81 uc004blx.5:81 AK299709:81 NM_199160:114 NM_014368:114 AL136570:221 BC103936:255 BC103937:255 BC103938:255 ENST00000560485.1:495 uc064vmi.1:495 ENST00000541397.2:498 NM_001242333:498 uc022bmx.2:498 AK297175:498 |
TATA-Box annotation
| Distance to TSS: | -134 |
|---|---|
| Nearest PromoterID: | NM_199160 |
| Entrez ID: | 26468 |
| Nearest Unigene: | Hs.103137 |
| Nearest Refseq: | NM_014368 |
| Nearest Ensembl: | ENSG00000106852 |
| Gene Name: | LIM homeobox 6 |
| Gene Alias: | LHX6.1 |
| Gene Description: | LIM homeobox 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
