Difference between revisions of "TSS:Hg 102434.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=207 |entrez_id=2516 |gc_percent=0.681592 |gene_alias=AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXY3|hSF-1 |gene_description=nucl...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ELP= | ||
| + | |FTZ1= | ||
| + | |FTZF1= | ||
| + | |POF7= | ||
| + | |SF-1= | ||
| + | |SF1= | ||
| + | |SPGF8= | ||
| + | |SRXY3= | ||
| + | |all_trans=ENST00000455734.1:-19 uc064vqc.1:-19 ENST00000620110.4:-204 NM_004959:-204 uc022bnh.2:-204 BC032501:-204 ENST00000373588.8:-214 uc004boo.2:-214 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-19 | ||
|distance_to_tss=207 | |distance_to_tss=207 | ||
| + | |end=124507216 | ||
|entrez_id=2516 | |entrez_id=2516 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXY3|hSF-1 | |gene_alias=AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXY3|hSF-1 | ||
|gene_description=nuclear receptor subfamily 5 group A member 1 | |gene_description=nuclear receptor subfamily 5 group A member 1 | ||
| − | |gene_name=NR5A1 | + | |gene_id=2516 |
| + | |gene_name=nuclear receptor subfamily 5 group A member 1 | ||
| + | |gene_source=HGNC:7983 | ||
| + | |gene_symbol=NR5A1 | ||
| + | |gene_synonyms=AD4BP ELP FTZ1 SF-1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hSF-1= | ||
| + | |hgnc_mgi_id=HGNC:7983 | ||
|nearest_ensembl=ENSG00000136931 | |nearest_ensembl=ENSG00000136931 | ||
|nearest_promoter_id=NM_004959 | |nearest_promoter_id=NM_004959 | ||
|nearest_refseq=NM_004959 | |nearest_refseq=NM_004959 | ||
|nearest_unigene=Hs.495108 | |nearest_unigene=Hs.495108 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=124507209 | ||
| + | |strand=- | ||
|tata_box="-12(CCTCTAATGGCC,+,0.00)" | |tata_box="-12(CCTCTAATGGCC,+,0.00)" | ||
| + | |transcript_name=ENST00000455734.1 uc064vqc.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102434.1 | |tss_id=hg_102434.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5T6F6 | ||
}} | }} | ||
Revision as of 19:26, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000455734.1 uc064vqc.1 |
|---|---|
| Distance: | -19 |
| Num_trans: | 8 |
| All_trans: | ENST00000455734.1:-19 uc064vqc.1:-19 ENST00000620110.4:-204 NM_004959:-204 uc022bnh.2:-204 BC032501:-204 ENST00000373588.8:-214 uc004boo.2:-214 |
TATA-Box annotation
| Distance to TSS: | 207 |
|---|---|
| Nearest PromoterID: | NM_004959 |
| Entrez ID: | 2516 |
| Nearest Unigene: | Hs.495108 |
| Nearest Refseq: | NM_004959 |
| Nearest Ensembl: | ENSG00000136931 |
| Gene Name: | nuclear receptor subfamily 5 group A member 1 |
| Gene Alias: | AD4BP |
| Gene Description: | nuclear receptor subfamily 5 group A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-12(CCTCTAATGGCC,+,0.00)" |
