Difference between revisions of "TSS:Hg 102446.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=96 |entrez_id=2649 |gc_percent=0.771144 |gene_alias=CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR |gene_description=nuclear receptor subf...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |GCNF= | ||
| + | |GCNF1= | ||
| + | |NR61= | ||
| + | |RTR= | ||
| + | |all_trans=U64876:15 U80802:-57 ENST00000487099.6:-58 uc004bor.3:-58 X99975:-58 ENST00000344523.8:-68 uc064vqe.1:-68 ENST00000373584.7:-78 uc010mwq.3:-78 AF004291:-78 S83309:-78 HQ692858:90 HQ709185:90 ENST00000416460.6:-91 NM_033334:-91 NM_001489:-91 NM_001278546:-91 uc004boq.3:-91 BC030600:-91 BC042395:-91 BC042406:-91 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=15 | ||
|distance_to_tss=96 | |distance_to_tss=96 | ||
| + | |end=124771219 | ||
|entrez_id=2649 | |entrez_id=2649 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| Line 8: | Line 16: | ||
|gene_name=NR6A1 | |gene_name=NR6A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hGCNF= | ||
| + | |hRTR= | ||
|nearest_ensembl=ENSG00000148200 | |nearest_ensembl=ENSG00000148200 | ||
|nearest_promoter_id=NM_001489 | |nearest_promoter_id=NM_001489 | ||
|nearest_refseq=NM_001489 | |nearest_refseq=NM_001489 | ||
|nearest_unigene=Hs.20131 | |nearest_unigene=Hs.20131 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=124771208 | ||
| + | |strand=- | ||
| + | |transcript_name=U64876 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102446.1 | |tss_id=hg_102446.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 19:26, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | U64876 |
|---|---|
| Distance: | 15 |
| Num_trans: | 21 |
| All_trans: | U64876:15 U80802:-57 ENST00000487099.6:-58 uc004bor.3:-58 X99975:-58 ENST00000344523.8:-68 uc064vqe.1:-68 ENST00000373584.7:-78 uc010mwq.3:-78 AF004291:-78 S83309:-78 HQ692858:90 HQ709185:90 ENST00000416460.6:-91 NM_033334:-91 NM_001489:-91 NM_001278546:-91 uc004boq.3:-91 BC030600:-91 BC042395:-91 BC042406:-91 |
TATA-Box annotation
| Distance to TSS: | 96 |
|---|---|
| Nearest PromoterID: | NM_001489 |
| Entrez ID: | 2649 |
| Nearest Unigene: | Hs.20131 |
| Nearest Refseq: | NM_001489 |
| Nearest Ensembl: | ENSG00000148200 |
| Gene Name: | NR6A1 |
| Gene Alias: | CT150 |
| Gene Description: | nuclear receptor subfamily 6 group A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
