Difference between revisions of "TSS:Hg 10245.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.175 |distance_to_tss=560 |entrez_id=22883 |gc_percent=0.79602 |gene_alias=ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 |gene_de...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CDHR12= | ||
| + | |CST-1= | ||
| + | |CSTN1= | ||
| + | |PIK3CD= | ||
| + | |XB31alpha= | ||
| + | |alcalpha1= | ||
| + | |alcalpha2= | ||
| + | |all_trans=AK304813:0 ENST00000361311.4:-5 uc001aqi.4:-5 BC033902:-5 AK289798:220 AY753301:221 DQ891263:221 DQ894450:221 AB587312:221 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| + | |distance=0 | ||
|distance_to_tss=560 | |distance_to_tss=560 | ||
| + | |end=9823979 | ||
|entrez_id=22883 | |entrez_id=22883 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
|gene_alias=ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 | |gene_alias=ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 | ||
|gene_description=calsyntenin 1 | |gene_description=calsyntenin 1 | ||
| − | |gene_name=CLSTN1 | + | |gene_id=22883 |
| + | |gene_name=calsyntenin 1 | ||
| + | |gene_source=HGNC:17447 | ||
| + | |gene_symbol=CLSTN1 | ||
| + | |gene_synonyms=CDHR12 CSTN1 KIAA0911 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17447 | ||
|nearest_ensembl=ENSG00000171603 | |nearest_ensembl=ENSG00000171603 | ||
|nearest_promoter_id=NM_001009566 | |nearest_promoter_id=NM_001009566 | ||
|nearest_refseq=NM_014944 | |nearest_refseq=NM_014944 | ||
|nearest_unigene=Hs.29665 | |nearest_unigene=Hs.29665 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=9823953 | ||
| + | |strand=- | ||
| + | |transcript_name=AK304813 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10245.1 | |tss_id=hg_10245.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4E3Q1 | ||
}} | }} | ||
Revision as of 19:27, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK304813 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | AK304813:0 ENST00000361311.4:-5 uc001aqi.4:-5 BC033902:-5 AK289798:220 AY753301:221 DQ891263:221 DQ894450:221 AB587312:221 |
TATA-Box annotation
| Distance to TSS: | 560 |
|---|---|
| Nearest PromoterID: | NM_001009566 |
| Entrez ID: | 22883 |
| Nearest Unigene: | Hs.29665 |
| Nearest Refseq: | NM_014944 |
| Nearest Ensembl: | ENSG00000171603 |
| Gene Name: | calsyntenin 1 |
| Gene Alias: | ALC-ALPHA |
| Gene Description: | calsyntenin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
