Difference between revisions of "TSS:Hg 102456.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=5 |entrez_id=11224 |gc_percent=0.736318 |gene_alias=L35 |gene_description=ribosomal protein L35 |gene_name=RPL35 |gene_type=pro...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000348462.5:0 ENST00000629845.1:0 NM_007209:0 uc004boy.2:0 uc064vqn.1:0 BC000348:0 AK291072:0 BC010919:0 D28448:0 ENST00000487431.1:6 uc064vqm.1:6 ENST00000493018.5:7 uc064vql.1:7 ENST00000495728.1:-11 uc064vqo.1:-11 U12465:14 BC071915:15 ENST00000373570.8:27 uc064vqk.1:27 BC094828:386 CU674168:386 KJ893256:386 KJ898381:386 DQ891363:386 DQ894543:386 CR456877:386 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=5 | |distance_to_tss=5 | ||
| + | |end=124861970 | ||
|entrez_id=11224 | |entrez_id=11224 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
|gene_alias=L35 | |gene_alias=L35 | ||
|gene_description=ribosomal protein L35 | |gene_description=ribosomal protein L35 | ||
| − | |gene_name=RPL35 | + | |gene_id=11224 |
| + | |gene_name=ribosomal protein L35 | ||
| + | |gene_source=HGNC:10344 | ||
| + | |gene_symbol=RPL35 | ||
| + | |gene_synonyms=L35 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10344 | ||
|nearest_ensembl=ENSG00000136942 | |nearest_ensembl=ENSG00000136942 | ||
|nearest_promoter_id=NM_007209 | |nearest_promoter_id=NM_007209 | ||
|nearest_refseq=NM_007209 | |nearest_refseq=NM_007209 | ||
|nearest_unigene=Hs.182825 | |nearest_unigene=Hs.182825 | ||
| + | |num_trans=26 | ||
| + | |species=human | ||
| + | |start=124861941 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000348462.5 ENST00000629845.1 NM_007209 uc004boy.2 uc064vqn.1 BC000348 AK291072 BC010919 D28448 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102456.1 | |tss_id=hg_102456.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F2Z388 P42766 | ||
}} | }} | ||
Revision as of 19:27, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000348462.5 ENST00000629845.1 NM_007209 uc004boy.2 uc064vqn.1 BC000348 AK291072 BC010919 D28448 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26 |
| All_trans: | ENST00000348462.5:0 ENST00000629845.1:0 NM_007209:0 uc004boy.2:0 uc064vqn.1:0 BC000348:0 AK291072:0 BC010919:0 D28448:0 ENST00000487431.1:6 uc064vqm.1:6 ENST00000493018.5:7 uc064vql.1:7 ENST00000495728.1:-11 uc064vqo.1:-11 U12465:14 BC071915:15 ENST00000373570.8:27 uc064vqk.1:27 BC094828:386 CU674168:386 KJ893256:386 KJ898381:386 DQ891363:386 DQ894543:386 CR456877:386 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_007209 |
| Entrez ID: | 11224 |
| Nearest Unigene: | Hs.182825 |
| Nearest Refseq: | NM_007209 |
| Nearest Ensembl: | ENSG00000136942 |
| Gene Name: | ribosomal protein L35 |
| Gene Alias: | L35 |
| Gene Description: | ribosomal protein L35 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
