Difference between revisions of "TSS:Hg 102463.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=62 |entrez_id=286205 |gc_percent=0.776119 |gene_alias=C9orf126|NET40 |gene_description=suppressor of cancer cell invasion |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NET40= | ||
| + | |all_trans=ENST00000336505.10:0 ENST00000477186.5:0 ENST00000373549.8:0 ENST00000468569.1:0 uc004bpe.4:0 uc064vqx.1:0 uc004bpd.4:0 uc064vrb.1:0 BC104030:0 BC104031:0 BC104032:0 AK098024:0 AK093983:0 AB590983:21 NM_173690:-23 NM_001144877:-23 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=62 | |distance_to_tss=62 | ||
| + | |end=125143536 | ||
|entrez_id=286205 | |entrez_id=286205 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
|gene_alias=C9orf126|NET40 | |gene_alias=C9orf126|NET40 | ||
|gene_description=suppressor of cancer cell invasion | |gene_description=suppressor of cancer cell invasion | ||
| − | |gene_name=SCAI | + | |gene_id=286205 |
| + | |gene_name=suppressor of cancer cell invasion | ||
| + | |gene_source=HGNC:26709 | ||
| + | |gene_symbol=SCAI | ||
| + | |gene_synonyms=FLJ36664 NET40 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26709 | ||
|nearest_ensembl=ENSG00000173611 | |nearest_ensembl=ENSG00000173611 | ||
|nearest_promoter_id=NM_173690 | |nearest_promoter_id=NM_173690 | ||
|nearest_refseq=NM_173690 | |nearest_refseq=NM_173690 | ||
|nearest_unigene=Hs.59504 | |nearest_unigene=Hs.59504 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=125143457 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000336505.10 ENST00000477186.5 ENST00000373549.8 ENST00000468569.1 uc004bpe.4 uc064vqx.1 uc004bpd.4 uc064vrb.1 BC104030 BC104031 BC104032 AK098024 AK093983 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102463.1 | |tss_id=hg_102463.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q3SXZ0 Q8N9R8 | ||
}} | }} | ||
Revision as of 19:27, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000336505.10 ENST00000477186.5 ENST00000373549.8 ENST00000468569.1 uc004bpe.4 uc064vqx.1 uc004bpd.4 uc064vrb.1 BC104030 BC104031 BC104032 AK098024 AK093983 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000336505.10:0 ENST00000477186.5:0 ENST00000373549.8:0 ENST00000468569.1:0 uc004bpe.4:0 uc064vqx.1:0 uc004bpd.4:0 uc064vrb.1:0 BC104030:0 BC104031:0 BC104032:0 AK098024:0 AK093983:0 AB590983:21 NM_173690:-23 NM_001144877:-23 |
TATA-Box annotation
| Distance to TSS: | 62 |
|---|---|
| Nearest PromoterID: | NM_173690 |
| Entrez ID: | 286205 |
| Nearest Unigene: | Hs.59504 |
| Nearest Refseq: | NM_173690 |
| Nearest Ensembl: | ENSG00000173611 |
| Gene Name: | suppressor of cancer cell invasion |
| Gene Alias: | C9orf126 |
| Gene Description: | suppressor of cancer cell invasion |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
