Difference between revisions of "TSS:Hg 102472.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=23 |entrez_id=5537 |gc_percent=0.686567 |gene_alias=PP6|PP6C |gene_description=protein phosphatase 6 catalytic subunit |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PP6C= | ||
| + | |all_trans=ENST00000451402.5:-16 ENST00000415905.5:-16 NM_001123355:-16 NM_001123369:-16 NM_002721:-16 uc010mww.4:-16 uc010mwv.4:-16 ENST00000373547.8:91 uc004bpg.5:91 AK299087:106 AK295190:106 AK316527:117 BC006990:123 ENST00000456642.1:126 uc064vrc.1:126 AK312332:138 AK295752:150 X92972:170 AF035158:191 KJ891876:191 BT019708:191 AB385530:191 KU178271:191 KU178272:191 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=-16 | ||
|distance_to_tss=23 | |distance_to_tss=23 | ||
| + | |end=125189923 | ||
|entrez_id=5537 | |entrez_id=5537 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
|gene_alias=PP6|PP6C | |gene_alias=PP6|PP6C | ||
|gene_description=protein phosphatase 6 catalytic subunit | |gene_description=protein phosphatase 6 catalytic subunit | ||
| − | |gene_name=PPP6C | + | |gene_id=5537 |
| + | |gene_name=protein phosphatase 6 catalytic subunit | ||
| + | |gene_source=HGNC:9323 | ||
| + | |gene_symbol=PPP6C | ||
| + | |gene_synonyms=PP6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9323 | ||
|nearest_ensembl=ENSG00000119414 | |nearest_ensembl=ENSG00000119414 | ||
|nearest_promoter_id=NM_002721 | |nearest_promoter_id=NM_002721 | ||
|nearest_refseq=NM_002721 | |nearest_refseq=NM_002721 | ||
|nearest_unigene=Hs.744091 | |nearest_unigene=Hs.744091 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=125189908 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000451402.5 ENST00000415905.5 NM_001123355 NM_001123369 NM_002721 uc010mww.4 uc010mwv.4 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102472.1 | |tss_id=hg_102472.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O00743 | ||
}} | }} | ||
Revision as of 19:27, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000451402.5 ENST00000415905.5 NM_001123355 NM_001123369 NM_002721 uc010mww.4 uc010mwv.4 |
|---|---|
| Distance: | -16 |
| Num_trans: | 24 |
| All_trans: | ENST00000451402.5:-16 ENST00000415905.5:-16 NM_001123355:-16 NM_001123369:-16 NM_002721:-16 uc010mww.4:-16 uc010mwv.4:-16 ENST00000373547.8:91 uc004bpg.5:91 AK299087:106 AK295190:106 AK316527:117 BC006990:123 ENST00000456642.1:126 uc064vrc.1:126 AK312332:138 AK295752:150 X92972:170 AF035158:191 KJ891876:191 BT019708:191 AB385530:191 KU178271:191 KU178272:191 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_002721 |
| Entrez ID: | 5537 |
| Nearest Unigene: | Hs.744091 |
| Nearest Refseq: | NM_002721 |
| Nearest Ensembl: | ENSG00000119414 |
| Gene Name: | protein phosphatase 6 catalytic subunit |
| Gene Alias: | PP6 |
| Gene Description: | protein phosphatase 6 catalytic subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
