Difference between revisions of "TSS:Hg 102484.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=47 |entrez_id=3309 |gc_percent=0.616915 |gene_alias=BIP|GRP78|HEL-S-89n|MIF2 |gene_description=heat shock protein family A (Hsp7...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GRP78= | ||
| + | |HEL-S-89n= | ||
| + | |MIF2= | ||
| + | |all_trans=ENST00000324460.6:0 uc004bpn.4:0 BC020235:0 X87949:0 AK293604:0 NM_005347:-35 AJ271729:189 EU794617:189 AF216292:202 DQ892173:202 DQ895368:202 AB527282:202 AF188611:258 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=0 | ||
|distance_to_tss=47 | |distance_to_tss=47 | ||
| + | |end=125241352 | ||
|entrez_id=3309 | |entrez_id=3309 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
|gene_alias=BIP|GRP78|HEL-S-89n|MIF2 | |gene_alias=BIP|GRP78|HEL-S-89n|MIF2 | ||
|gene_description=heat shock protein family A (Hsp70) member 5 | |gene_description=heat shock protein family A (Hsp70) member 5 | ||
| − | |gene_name=HSPA5 | + | |gene_id=3309 |
| + | |gene_name=heat shock protein family A (Hsp70) member 5 | ||
| + | |gene_source=HGNC:5238 | ||
| + | |gene_symbol=HSPA5 | ||
| + | |gene_synonyms=BiP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5238 | ||
|nearest_ensembl=ENSG00000044574 | |nearest_ensembl=ENSG00000044574 | ||
|nearest_promoter_id=NM_005347 | |nearest_promoter_id=NM_005347 | ||
|nearest_refseq=NM_005347 | |nearest_refseq=NM_005347 | ||
|nearest_unigene=Hs.743241 | |nearest_unigene=Hs.743241 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=125241327 | ||
| + | |strand=- | ||
|tata_box="-36(GGGTATATAAGC,-,0.00)" | |tata_box="-36(GGGTATATAAGC,-,0.00)" | ||
| + | |transcript_name=ENST00000324460.6 uc004bpn.4 BC020235 X87949 AK293604 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102484.1 | |tss_id=hg_102484.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DEF7 V9HWB4 | ||
}} | }} | ||
Revision as of 19:28, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000324460.6 uc004bpn.4 BC020235 X87949 AK293604 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000324460.6:0 uc004bpn.4:0 BC020235:0 X87949:0 AK293604:0 NM_005347:-35 AJ271729:189 EU794617:189 AF216292:202 DQ892173:202 DQ895368:202 AB527282:202 AF188611:258 |
TATA-Box annotation
| Distance to TSS: | 47 |
|---|---|
| Nearest PromoterID: | NM_005347 |
| Entrez ID: | 3309 |
| Nearest Unigene: | Hs.743241 |
| Nearest Refseq: | NM_005347 |
| Nearest Ensembl: | ENSG00000044574 |
| Gene Name: | heat shock protein family A (Hsp70) member 5 |
| Gene Alias: | BIP |
| Gene Description: | heat shock protein family A (Hsp70) member 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-36(GGGTATATAAGC,-,0.00)" |
