Difference between revisions of "TSS:Hg 102509.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=28 |entrez_id=79109 |gc_percent=0.716418 |gene_alias=JC310|MIP1|SIN1|SIN1b|SIN1g |gene_description=mitogen-activated protein kin...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MIP1= | ||
| + | |SIN1= | ||
| + | |SIN1b= | ||
| + | |SIN1g= | ||
| + | |all_trans=ENST00000373511.6:0 ENST00000350766.7:0 ENST00000373503.7:0 ENST00000394060.7:0 ENST00000373496.3:0 ENST00000433483.1:0 uc004bpz.4:0 uc004bpy.4:0 uc004bpw.4:0 uc004bqa.5:0 uc064vsj.1:0 uc064vsk.1:0 AY524429:0 AY524431:0 AY524432:0 AL833042:0 BC002326:0 BC003044:0 AY633624:0 AY633625:0 AY633626:0 AK290060:0 AY524430:0 ENST00000265960.7:-3 ENST00000394063.5:-3 NM_001006621:-3 NM_001006617:-3 NM_024117:-3 NM_001006619:-3 NM_001006620:-3 NM_001006618:-3 uc004bpv.3:-3 uc004bpx.3:-3 ENST00000427078.5:4 uc064vse.1:4 M37191:177 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=0 | ||
|distance_to_tss=28 | |distance_to_tss=28 | ||
| + | |end=125707231 | ||
|entrez_id=79109 | |entrez_id=79109 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=JC310|MIP1|SIN1|SIN1b|SIN1g | |gene_alias=JC310|MIP1|SIN1|SIN1b|SIN1g | ||
|gene_description=mitogen-activated protein kinase associated protein 1 | |gene_description=mitogen-activated protein kinase associated protein 1 | ||
| − | |gene_name=MAPKAP1 | + | |gene_id=79109 |
| + | |gene_name=mitogen-activated protein kinase associated protein 1 | ||
| + | |gene_source=HGNC:18752 | ||
| + | |gene_symbol=MAPKAP1 | ||
| + | |gene_synonyms=MGC2745 MIP1 SIN1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18752 | ||
|nearest_ensembl=ENSG00000119487 | |nearest_ensembl=ENSG00000119487 | ||
|nearest_promoter_id=NM_001006617 | |nearest_promoter_id=NM_001006617 | ||
|nearest_refseq=NM_024117 | |nearest_refseq=NM_024117 | ||
|nearest_unigene=Hs.495138 | |nearest_unigene=Hs.495138 | ||
| + | |num_trans=36 | ||
| + | |species=human | ||
| + | |start=125707180 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000373511.6 ENST00000350766.7 ENST00000373503.7 ENST00000394060.7 ENST00000373496.3 ENST00000433483.1 uc004bpz.4 uc004bpy.4 uc004bpw.4 uc004bqa.5 uc064vsj.1 uc064vsk.1 AY524429 AY524431 AY524432 AL833042 BC002326 BC003044 AY633624 AY633625 AY633626 AK290060 AY524430 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102509.1 | |tss_id=hg_102509.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R863 B1AMB1 B1AMB2 Q9BPZ7 | ||
}} | }} | ||
Revision as of 19:29, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000373511.6 ENST00000350766.7 ENST00000373503.7 ENST00000394060.7 ENST00000373496.3 ENST00000433483.1 uc004bpz.4 uc004bpy.4 uc004bpw.4 uc004bqa.5 uc064vsj.1 uc064vsk.1 AY524429 AY524431 AY524432 AL833042 BC002326 BC003044 AY633624 AY633625 AY633626 AK290060 AY524430 |
|---|---|
| Distance: | 0 |
| Num_trans: | 36 |
| All_trans: | ENST00000373511.6:0 ENST00000350766.7:0 ENST00000373503.7:0 ENST00000394060.7:0 ENST00000373496.3:0 ENST00000433483.1:0 uc004bpz.4:0 uc004bpy.4:0 uc004bpw.4:0 uc004bqa.5:0 uc064vsj.1:0 uc064vsk.1:0 AY524429:0 AY524431:0 AY524432:0 AL833042:0 BC002326:0 BC003044:0 AY633624:0 AY633625:0 AY633626:0 AK290060:0 AY524430:0 ENST00000265960.7:-3 ENST00000394063.5:-3 NM_001006621:-3 NM_001006617:-3 NM_024117:-3 NM_001006619:-3 NM_001006620:-3 NM_001006618:-3 uc004bpv.3:-3 uc004bpx.3:-3 ENST00000427078.5:4 uc064vse.1:4 M37191:177 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001006617 |
| Entrez ID: | 79109 |
| Nearest Unigene: | Hs.495138 |
| Nearest Refseq: | NM_024117 |
| Nearest Ensembl: | ENSG00000119487 |
| Gene Name: | mitogen-activated protein kinase associated protein 1 |
| Gene Alias: | JC310 |
| Gene Description: | mitogen-activated protein kinase associated protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
