Difference between revisions of "TSS:Mm 123921.1"
From referenceTSS
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| − | {{ | + | {{TSSDetail |
| − | | | + | |Bri= |
| − | | | + | |Bri2= |
| + | |Bricd2b= | ||
| + | |D14Sel6= | ||
| + | |E25BMM= | ||
| + | |all_trans=AK210559:55 AK200695:57 AK008861:124 | ||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=55 |
|distance_to_tss=20585 | |distance_to_tss=20585 | ||
| − | |end= | + | |end=73364693 |
|entrez_id=16432 | |entrez_id=16432 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
|gene_alias=AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2 | |gene_alias=AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2 | ||
|gene_description=integral membrane protein 2B | |gene_description=integral membrane protein 2B | ||
| − | |gene_id= | + | |gene_id=16432 |
| − | |gene_name= | + | |gene_name=integral membrane protein 2B |
| − | |gene_source= | + | |gene_source=MGI:1309517 |
| − | |gene_symbol= | + | |gene_symbol=Itm2b |
| − | |gene_synonyms= | + | |gene_synonyms=Bri2 Bricd2b D14Sel6 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=MGI:1309517 |
| + | |imBRI2= | ||
|nearest_ensembl=ENSMUSG00000022108 | |nearest_ensembl=ENSMUSG00000022108 | ||
|nearest_promoter_id=NM_008410 | |nearest_promoter_id=NM_008410 | ||
|nearest_refseq=NM_008410 | |nearest_refseq=NM_008410 | ||
|nearest_unigene=Mm.4266 | |nearest_unigene=Mm.4266 | ||
| − | |num_trans= | + | |num_trans=3 |
| + | |peakPage= | ||
|peak_id=mm_123921.1 | |peak_id=mm_123921.1 | ||
|peak_score=1 | |peak_score=1 | ||
| − | |start= | + | |species=mouse |
| − | |strand= | + | |start=73364678 |
| + | |strand=- | ||
|tata_box="-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00)" | |tata_box="-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00)" | ||
| − | |transcript_name= | + | |transcript_name=AK210559 |
| + | |tss_classification=yes | ||
| + | |tss_id=mm_123921.1 | ||
| + | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 03:05, 17 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK210559 |
|---|---|
| Distance: | 55 |
| Num_trans: | 3 |
| All_trans: | AK210559:55 AK200695:57 AK008861:124 |
TATA-Box annotation
| Distance to TSS: | 20585 |
|---|---|
| Nearest PromoterID: | NM_008410 |
| Entrez ID: | 16432 |
| Nearest Unigene: | Mm.4266 |
| Nearest Refseq: | NM_008410 |
| Nearest Ensembl: | ENSMUSG00000022108 |
| Gene Name: | integral membrane protein 2B |
| Gene Alias: | AI256040 |
| Gene Description: | integral membrane protein 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00)" |
