Difference between revisions of "TSS:Hg 10255.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.16 |distance_to_tss=-115 |entrez_id=56998 |gc_percent=0.840796 |gene_alias=ICAT |gene_description=catenin beta interacting protein 1 |gene_name=CTNN...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000400904.7:32 uc001aql.2:32 ENST00000377263.5:105 uc001aqk.2:105 NM_001012329:110 NM_020248:110 BC014300:127 BC046920:129 BC035794:142 AB021262:144 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| + | |distance=32 | ||
|distance_to_tss=-115 | |distance_to_tss=-115 | ||
| + | |end=9910378 | ||
|entrez_id=56998 | |entrez_id=56998 | ||
|gc_percent=0.840796 | |gc_percent=0.840796 | ||
|gene_alias=ICAT | |gene_alias=ICAT | ||
|gene_description=catenin beta interacting protein 1 | |gene_description=catenin beta interacting protein 1 | ||
| − | |gene_name=CTNNBIP1 | + | |gene_id=56998 |
| + | |gene_name=catenin beta interacting protein 1 | ||
| + | |gene_source=HGNC:16913 | ||
| + | |gene_symbol=CTNNBIP1 | ||
| + | |gene_synonyms=ICAT MGC15093 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16913 | ||
|nearest_ensembl=ENSG00000178585 | |nearest_ensembl=ENSG00000178585 | ||
|nearest_promoter_id=NM_001012329 | |nearest_promoter_id=NM_001012329 | ||
|nearest_refseq=NM_020248 | |nearest_refseq=NM_020248 | ||
|nearest_unigene=Hs.463759 | |nearest_unigene=Hs.463759 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=9910367 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000400904.7 uc001aql.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10255.1 | |tss_id=hg_10255.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R4D7 Q9NSA3 | ||
}} | }} | ||
Revision as of 19:31, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000400904.7 uc001aql.2 |
|---|---|
| Distance: | 32 |
| Num_trans: | 10 |
| All_trans: | ENST00000400904.7:32 uc001aql.2:32 ENST00000377263.5:105 uc001aqk.2:105 NM_001012329:110 NM_020248:110 BC014300:127 BC046920:129 BC035794:142 AB021262:144 |
TATA-Box annotation
| Distance to TSS: | -115 |
|---|---|
| Nearest PromoterID: | NM_001012329 |
| Entrez ID: | 56998 |
| Nearest Unigene: | Hs.463759 |
| Nearest Refseq: | NM_020248 |
| Nearest Ensembl: | ENSG00000178585 |
| Gene Name: | catenin beta interacting protein 1 |
| Gene Alias: | ICAT |
| Gene Description: | catenin beta interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.840796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
