Difference between revisions of "TSS:Hg 102550.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=51 |entrez_id=64855 |gc_percent=0.840796 |gene_alias=C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 |gene_description=family with sequen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MEG-3= | ||
| + | |MINERVA= | ||
| + | |OC58= | ||
| + | |all_trans=ENST00000373312.3:0 ENST00000484348.2:0 uc004brh.5:0 uc064vvu.1:0 BC110345:0 NM_022833:-3 AF192911:-3 ENST00000468379.1:66 uc064vvt.1:66 BC067366:74 ENST00000478917.1:134 uc064vvs.1:134 AB210016:164 | ||
| + | |bA356B19.6= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=0 | ||
|distance_to_tss=51 | |distance_to_tss=51 | ||
| + | |end=127569114 | ||
|entrez_id=64855 | |entrez_id=64855 | ||
|gc_percent=0.840796 | |gc_percent=0.840796 | ||
|gene_alias=C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 | |gene_alias=C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 | ||
|gene_description=family with sequence similarity 129 member B | |gene_description=family with sequence similarity 129 member B | ||
| − | |gene_name=FAM129B | + | |gene_id=64855 |
| + | |gene_name=family with sequence similarity 129 member B | ||
| + | |gene_source=HGNC:25282 | ||
| + | |gene_symbol=FAM129B | ||
| + | |gene_synonyms=DKFZP434H0820 FLJ13518 FLJ22151 FLJ22298 MINERVA bA356B19.6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25282 | ||
|nearest_ensembl=ENSG00000136830 | |nearest_ensembl=ENSG00000136830 | ||
|nearest_promoter_id=NM_022833 | |nearest_promoter_id=NM_022833 | ||
|nearest_refseq=NM_022833 | |nearest_refseq=NM_022833 | ||
|nearest_unigene=Hs.522401 | |nearest_unigene=Hs.522401 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=127569018 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000373312.3 ENST00000484348.2 uc004brh.5 uc064vvu.1 BC110345 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102550.1 | |tss_id=hg_102550.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q2YD88 Q96TA1 | ||
}} | }} | ||
Revision as of 19:31, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000373312.3 ENST00000484348.2 uc004brh.5 uc064vvu.1 BC110345 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000373312.3:0 ENST00000484348.2:0 uc004brh.5:0 uc064vvu.1:0 BC110345:0 NM_022833:-3 AF192911:-3 ENST00000468379.1:66 uc064vvt.1:66 BC067366:74 ENST00000478917.1:134 uc064vvs.1:134 AB210016:164 |
TATA-Box annotation
| Distance to TSS: | 51 |
|---|---|
| Nearest PromoterID: | NM_022833 |
| Entrez ID: | 64855 |
| Nearest Unigene: | Hs.522401 |
| Nearest Refseq: | NM_022833 |
| Nearest Ensembl: | ENSG00000136830 |
| Gene Name: | family with sequence similarity 129 member B |
| Gene Alias: | C9orf88 |
| Gene Description: | family with sequence similarity 129 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.840796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
