Difference between revisions of "TSS:Hg 102558.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=57 |entrez_id=138428 |gc_percent=0.661692 |gene_alias=C9orf115|PTH1 |gene_description=peptidyl-tRNA hydrolase 1 homolog |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PTH1= | ||
| + | |all_trans=ENST00000414832.2:0 uc064vwq.1:0 ENST00000456267.5:3 uc064vwp.1:3 HQ257888:-9 KJ895525:-10 BC032117:-14 ENST00000335223.5:-16 uc004brm.4:-16 ENST00000416214.1:-20 uc064vwr.1:-20 ENST00000543175.4:-26 NM_001002913:-26 uc004bro.4:-26 BC047012:-26 ENST00000423807.5:-372 uc064vwo.1:-372 BC015230:-372 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=57 | |distance_to_tss=57 | ||
| + | |end=127715631 | ||
|entrez_id=138428 | |entrez_id=138428 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=C9orf115|PTH1 | |gene_alias=C9orf115|PTH1 | ||
|gene_description=peptidyl-tRNA hydrolase 1 homolog | |gene_description=peptidyl-tRNA hydrolase 1 homolog | ||
| − | |gene_name=PTRH1 | + | |gene_id=138428 |
| + | |gene_name=peptidyl-tRNA hydrolase 1 homolog | ||
| + | |gene_source=HGNC:27039 | ||
| + | |gene_symbol=PTRH1 | ||
| + | |gene_synonyms=PTH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27039 | ||
|nearest_ensembl=ENSG00000187024 | |nearest_ensembl=ENSG00000187024 | ||
|nearest_promoter_id=NM_001345980 | |nearest_promoter_id=NM_001345980 | ||
|nearest_refseq=NM_001002913 | |nearest_refseq=NM_001002913 | ||
|nearest_unigene=Hs.653265 | |nearest_unigene=Hs.653265 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=127715606 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000414832.2 uc064vwq.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102558.1 | |tss_id=hg_102558.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A096LPA3 | ||
}} | }} | ||
Revision as of 19:31, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000414832.2 uc064vwq.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000414832.2:0 uc064vwq.1:0 ENST00000456267.5:3 uc064vwp.1:3 HQ257888:-9 KJ895525:-10 BC032117:-14 ENST00000335223.5:-16 uc004brm.4:-16 ENST00000416214.1:-20 uc064vwr.1:-20 ENST00000543175.4:-26 NM_001002913:-26 uc004bro.4:-26 BC047012:-26 ENST00000423807.5:-372 uc064vwo.1:-372 BC015230:-372 |
TATA-Box annotation
| Distance to TSS: | 57 |
|---|---|
| Nearest PromoterID: | NM_001345980 |
| Entrez ID: | 138428 |
| Nearest Unigene: | Hs.653265 |
| Nearest Refseq: | NM_001002913 |
| Nearest Ensembl: | ENSG00000187024 |
| Gene Name: | peptidyl-tRNA hydrolase 1 homolog |
| Gene Alias: | C9orf115 |
| Gene Description: | peptidyl-tRNA hydrolase 1 homolog |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
