Difference between revisions of "TSS:Hg 102559.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=18 |entrez_id=138428 |gc_percent=0.671642 |gene_alias=C9orf115|PTH1 |gene_description=peptidyl-tRNA hydrolase 1 homolog |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PTH1= | ||
| + | |all_trans=ENST00000335223.5:0 ENST00000543175.4:0 ENST00000416214.1:0 NM_001002913:0 uc004brm.4:0 uc004bro.4:0 uc064vwr.1:0 BC032117:0 BC047012:0 HQ257888:0 KJ895525:0 ENST00000414832.2:3 uc064vwq.1:3 ENST00000456267.5:30 uc064vwp.1:30 ENST00000423807.5:-321 uc064vwo.1:-321 BC015230:-321 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=18 | |distance_to_tss=18 | ||
| + | |end=127715682 | ||
|entrez_id=138428 | |entrez_id=138428 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=C9orf115|PTH1 | |gene_alias=C9orf115|PTH1 | ||
|gene_description=peptidyl-tRNA hydrolase 1 homolog | |gene_description=peptidyl-tRNA hydrolase 1 homolog | ||
| − | |gene_name=PTRH1 | + | |gene_id=138428 |
| + | |gene_name=peptidyl-tRNA hydrolase 1 homolog | ||
| + | |gene_source=HGNC:27039 | ||
| + | |gene_symbol=PTRH1 | ||
| + | |gene_synonyms=PTH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27039 | ||
|nearest_ensembl=ENSG00000187024 | |nearest_ensembl=ENSG00000187024 | ||
|nearest_promoter_id=NM_001345980 | |nearest_promoter_id=NM_001345980 | ||
|nearest_refseq=NM_001002913 | |nearest_refseq=NM_001002913 | ||
|nearest_unigene=Hs.653265 | |nearest_unigene=Hs.653265 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=127715633 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000335223.5 ENST00000543175.4 ENST00000416214.1 NM_001002913 uc004brm.4 uc004bro.4 uc064vwr.1 BC032117 BC047012 HQ257888 KJ895525 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102559.1 | |tss_id=hg_102559.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A096LP34 Q86Y79 | ||
}} | }} | ||
Revision as of 19:31, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000335223.5 ENST00000543175.4 ENST00000416214.1 NM_001002913 uc004brm.4 uc004bro.4 uc064vwr.1 BC032117 BC047012 HQ257888 KJ895525 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000335223.5:0 ENST00000543175.4:0 ENST00000416214.1:0 NM_001002913:0 uc004brm.4:0 uc004bro.4:0 uc064vwr.1:0 BC032117:0 BC047012:0 HQ257888:0 KJ895525:0 ENST00000414832.2:3 uc064vwq.1:3 ENST00000456267.5:30 uc064vwp.1:30 ENST00000423807.5:-321 uc064vwo.1:-321 BC015230:-321 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_001345980 |
| Entrez ID: | 138428 |
| Nearest Unigene: | Hs.653265 |
| Nearest Refseq: | NM_001002913 |
| Nearest Ensembl: | ENSG00000187024 |
| Gene Name: | peptidyl-tRNA hydrolase 1 homolog |
| Gene Alias: | C9orf115 |
| Gene Description: | peptidyl-tRNA hydrolase 1 homolog |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
