Difference between revisions of "TSS:Hg 102560.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=8811 |entrez_id=158248 |gc_percent=0.721393 |gene_alias=- |gene_description=tetratricopeptide repeat domain 16 |gene_name=TTC16...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000419060.5:0 uc011mah.4:0 AK090922:0 ENST00000429848.1:33 uc064vws.1:33 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=0 | ||
|distance_to_tss=8811 | |distance_to_tss=8811 | ||
| + | |end=127724885 | ||
|entrez_id=158248 | |entrez_id=158248 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=tetratricopeptide repeat domain 16 | |gene_description=tetratricopeptide repeat domain 16 | ||
| − | |gene_name= | + | |gene_id=138428 |
| + | |gene_name=peptidyl-tRNA hydrolase 1 homolog | ||
| + | |gene_source=HGNC:27039 | ||
| + | |gene_symbol=PTRH1 | ||
| + | |gene_synonyms=PTH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27039 | ||
|nearest_ensembl=ENSG00000167094 | |nearest_ensembl=ENSG00000167094 | ||
|nearest_promoter_id=NM_144965 | |nearest_promoter_id=NM_144965 | ||
|nearest_refseq=NM_144965 | |nearest_refseq=NM_144965 | ||
|nearest_unigene=Hs.642748 | |nearest_unigene=Hs.642748 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=127724864 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000419060.5 uc011mah.4 AK090922 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102560.1 | |tss_id=hg_102560.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q86Y79 | ||
}} | }} | ||
Revision as of 19:31, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000419060.5 uc011mah.4 AK090922 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENST00000419060.5:0 uc011mah.4:0 AK090922:0 ENST00000429848.1:33 uc064vws.1:33 |
TATA-Box annotation
| Distance to TSS: | 8811 |
|---|---|
| Nearest PromoterID: | NM_144965 |
| Entrez ID: | 158248 |
| Nearest Unigene: | Hs.642748 |
| Nearest Refseq: | NM_144965 |
| Nearest Ensembl: | ENSG00000167094 |
| Gene Name: | peptidyl-tRNA hydrolase 1 homolog |
| Gene Alias: | - |
| Gene Description: | tetratricopeptide repeat domain 16 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
