Difference between revisions of "TSS:Hg 102561.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=72 |entrez_id=27433 |gc_percent=0.746269 |gene_alias=TORP1 |gene_description=torsin family 2 member A |gene_name=TOR2A |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000463256.5:0 ENST00000493439.1:0 uc064vww.1:0 uc064vwz.1:0 BC080527:0 AK027677:0 BC100907:0 BC100908:0 BC100909:0 BC100910:0 BC156122:1 BC156918:1 BC160144:1 ENST00000336067.10:-8 uc004brt.5:-8 AK075520:-8 ENST00000373281.8:-10 ENST00000463577.2:-10 uc004brw.5:-10 uc011maj.3:-10 AK055034:-10 ENST00000472723.1:-23 uc064vwv.1:-23 AK092388:-23 ENST00000496460.5:-29 uc064vwx.1:-29 AY358180:-29 BC062340:-30 ENST00000373284.9:-33 uc004brs.5:-33 NM_001134431:-65 NM_001134430:-65 NM_001085347:-65 NM_001252021:-65 NM_130459:-65 NM_001252023:-65 NM_001252018:-65 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=72 | |distance_to_tss=72 | ||
| + | |end=127735284 | ||
|entrez_id=27433 | |entrez_id=27433 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
|gene_alias=TORP1 | |gene_alias=TORP1 | ||
|gene_description=torsin family 2 member A | |gene_description=torsin family 2 member A | ||
| − | |gene_name=TOR2A | + | |gene_id=27433 |
| + | |gene_name=torsin family 2 member A | ||
| + | |gene_source=HGNC:11996 | ||
| + | |gene_symbol=TOR2A | ||
| + | |gene_synonyms=FLJ14771 TORP1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11996 | ||
|nearest_ensembl=ENSG00000160404 | |nearest_ensembl=ENSG00000160404 | ||
|nearest_promoter_id=NM_001252021 | |nearest_promoter_id=NM_001252021 | ||
|nearest_refseq=NM_130459 | |nearest_refseq=NM_130459 | ||
|nearest_unigene=Hs.444106 | |nearest_unigene=Hs.444106 | ||
| + | |num_trans=37 | ||
| + | |species=human | ||
| + | |start=127735270 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000463256.5 ENST00000493439.1 uc064vww.1 uc064vwz.1 BC080527 AK027677 BC100907 BC100908 BC100909 BC100910 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102561.1 | |tss_id=hg_102561.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JU69 | ||
}} | }} | ||
Revision as of 19:31, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000463256.5 ENST00000493439.1 uc064vww.1 uc064vwz.1 BC080527 AK027677 BC100907 BC100908 BC100909 BC100910 |
|---|---|
| Distance: | 0 |
| Num_trans: | 37 |
| All_trans: | ENST00000463256.5:0 ENST00000493439.1:0 uc064vww.1:0 uc064vwz.1:0 BC080527:0 AK027677:0 BC100907:0 BC100908:0 BC100909:0 BC100910:0 BC156122:1 BC156918:1 BC160144:1 ENST00000336067.10:-8 uc004brt.5:-8 AK075520:-8 ENST00000373281.8:-10 ENST00000463577.2:-10 uc004brw.5:-10 uc011maj.3:-10 AK055034:-10 ENST00000472723.1:-23 uc064vwv.1:-23 AK092388:-23 ENST00000496460.5:-29 uc064vwx.1:-29 AY358180:-29 BC062340:-30 ENST00000373284.9:-33 uc004brs.5:-33 NM_001134431:-65 NM_001134430:-65 NM_001085347:-65 NM_001252021:-65 NM_130459:-65 NM_001252023:-65 NM_001252018:-65 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_001252021 |
| Entrez ID: | 27433 |
| Nearest Unigene: | Hs.444106 |
| Nearest Refseq: | NM_130459 |
| Nearest Ensembl: | ENSG00000160404 |
| Gene Name: | torsin family 2 member A |
| Gene Alias: | TORP1 |
| Gene Description: | torsin family 2 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
