Difference between revisions of "TSS:Hg 102562.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=41 |entrez_id=27433 |gc_percent=0.741294 |gene_alias=TORP1 |gene_description=torsin family 2 member A |gene_name=TOR2A |gene_typ...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000336067.10:0 ENST00000373284.9:0 ENST00000373281.8:0 ENST00000463577.2:0 ENST00000472723.1:0 ENST00000496460.5:0 uc004brt.5:0 uc004brs.5:0 uc004brw.5:0 uc011maj.3:0 uc064vwv.1:0 uc064vwx.1:0 AY358180:0 BC062340:0 AK075520:0 AK055034:0 AK092388:0 AK027677:9 BC100907:9 BC100908:9 BC100909:9 BC100910:9 ENST00000463256.5:12 ENST00000493439.1:12 uc064vww.1:12 uc064vwz.1:12 BC080527:12 BC156122:17 BC156918:17 BC160144:17 NM_001134431:-19 NM_001134430:-19 NM_001085347:-19 NM_001252021:-19 NM_130459:-19 NM_001252023:-19 NM_001252018:-19 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=0 | ||
|distance_to_tss=41 | |distance_to_tss=41 | ||
| + | |end=127735330 | ||
|entrez_id=27433 | |entrez_id=27433 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
|gene_alias=TORP1 | |gene_alias=TORP1 | ||
|gene_description=torsin family 2 member A | |gene_description=torsin family 2 member A | ||
| − | |gene_name=TOR2A | + | |gene_id=27433 |
| + | |gene_name=torsin family 2 member A | ||
| + | |gene_source=HGNC:11996 | ||
| + | |gene_symbol=TOR2A | ||
| + | |gene_synonyms=FLJ14771 TORP1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11996 | ||
|nearest_ensembl=ENSG00000160404 | |nearest_ensembl=ENSG00000160404 | ||
|nearest_promoter_id=NM_001252021 | |nearest_promoter_id=NM_001252021 | ||
|nearest_refseq=NM_130459 | |nearest_refseq=NM_130459 | ||
|nearest_unigene=Hs.444106 | |nearest_unigene=Hs.444106 | ||
| + | |num_trans=37 | ||
| + | |species=human | ||
| + | |start=127735286 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000336067.10 ENST00000373284.9 ENST00000373281.8 ENST00000463577.2 ENST00000472723.1 ENST00000496460.5 uc004brt.5 uc004brs.5 uc004brw.5 uc011maj.3 uc064vwv.1 uc064vwx.1 AY358180 BC062340 AK075520 AK055034 AK092388 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102562.1 | |tss_id=hg_102562.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JU69 Q8N2E6 | ||
}} | }} | ||
Revision as of 19:31, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000336067.10 ENST00000373284.9 ENST00000373281.8 ENST00000463577.2 ENST00000472723.1 ENST00000496460.5 uc004brt.5 uc004brs.5 uc004brw.5 uc011maj.3 uc064vwv.1 uc064vwx.1 AY358180 BC062340 AK075520 AK055034 AK092388 |
|---|---|
| Distance: | 0 |
| Num_trans: | 37 |
| All_trans: | ENST00000336067.10:0 ENST00000373284.9:0 ENST00000373281.8:0 ENST00000463577.2:0 ENST00000472723.1:0 ENST00000496460.5:0 uc004brt.5:0 uc004brs.5:0 uc004brw.5:0 uc011maj.3:0 uc064vwv.1:0 uc064vwx.1:0 AY358180:0 BC062340:0 AK075520:0 AK055034:0 AK092388:0 AK027677:9 BC100907:9 BC100908:9 BC100909:9 BC100910:9 ENST00000463256.5:12 ENST00000493439.1:12 uc064vww.1:12 uc064vwz.1:12 BC080527:12 BC156122:17 BC156918:17 BC160144:17 NM_001134431:-19 NM_001134430:-19 NM_001085347:-19 NM_001252021:-19 NM_130459:-19 NM_001252023:-19 NM_001252018:-19 |
TATA-Box annotation
| Distance to TSS: | 41 |
|---|---|
| Nearest PromoterID: | NM_001252021 |
| Entrez ID: | 27433 |
| Nearest Unigene: | Hs.444106 |
| Nearest Refseq: | NM_130459 |
| Nearest Ensembl: | ENSG00000160404 |
| Gene Name: | torsin family 2 member A |
| Gene Alias: | TORP1 |
| Gene Description: | torsin family 2 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
