Difference between revisions of "TSS:Hg 102563.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=178 |entrez_id=10044 |gc_percent=0.791045 |gene_alias=CHAT|NSP3|PRO34088|SHEP1 |gene_description=SH2 domain containing 3C |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NSP3= | ||
| + | |PRO34088= | ||
| + | |SHEP1= | ||
| + | |all_trans=ENST00000414380.1:69 uc064vxh.1:69 ENST00000629203.2:-165 uc010mxo.4:-165 AK291393:-165 NM_001142534:-173 ENST00000420366.5:-195 NM_001142533:-195 uc004bry.4:-195 AK056068:-195 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=69 | ||
|distance_to_tss=178 | |distance_to_tss=178 | ||
| + | |end=127755109 | ||
|entrez_id=10044 | |entrez_id=10044 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
|gene_alias=CHAT|NSP3|PRO34088|SHEP1 | |gene_alias=CHAT|NSP3|PRO34088|SHEP1 | ||
|gene_description=SH2 domain containing 3C | |gene_description=SH2 domain containing 3C | ||
| − | |gene_name=SH2D3C | + | |gene_id=10044 |
| + | |gene_name=SH2 domain containing 3C | ||
| + | |gene_source=HGNC:16884 | ||
| + | |gene_symbol=SH2D3C | ||
| + | |gene_synonyms=NSP3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16884 | ||
|nearest_ensembl=ENSG00000095370 | |nearest_ensembl=ENSG00000095370 | ||
|nearest_promoter_id=NM_001142534 | |nearest_promoter_id=NM_001142534 | ||
|nearest_refseq=NM_005489 | |nearest_refseq=NM_005489 | ||
|nearest_unigene=Hs.306412 | |nearest_unigene=Hs.306412 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=127755098 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000414380.1 uc064vxh.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102563.1 | |tss_id=hg_102563.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JU32 | ||
}} | }} | ||
Revision as of 19:31, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000414380.1 uc064vxh.1 |
|---|---|
| Distance: | 69 |
| Num_trans: | 10 |
| All_trans: | ENST00000414380.1:69 uc064vxh.1:69 ENST00000629203.2:-165 uc010mxo.4:-165 AK291393:-165 NM_001142534:-173 ENST00000420366.5:-195 NM_001142533:-195 uc004bry.4:-195 AK056068:-195 |
TATA-Box annotation
| Distance to TSS: | 178 |
|---|---|
| Nearest PromoterID: | NM_001142534 |
| Entrez ID: | 10044 |
| Nearest Unigene: | Hs.306412 |
| Nearest Refseq: | NM_005489 |
| Nearest Ensembl: | ENSG00000095370 |
| Gene Name: | SH2 domain containing 3C |
| Gene Alias: | CHAT |
| Gene Description: | SH2 domain containing 3C |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
