Difference between revisions of "TSS:Hg 102568.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=119 |entrez_id=10044 |gc_percent=0.606965 |gene_alias=CHAT|NSP3|PRO34088|SHEP1 |gene_description=SH2 domain containing 3C |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NSP3= | ||
| + | |PRO34088= | ||
| + | |SHEP1= | ||
| + | |all_trans=ENST00000488685.1:7 uc064vxg.1:7 AY358089:8 ENST00000464239.5:106 uc064vxf.1:106 ENST00000440630.5:-111 uc064vxe.1:-111 ENST00000429553.5:-113 NM_001142532:-113 uc004brz.5:-113 AK311510:-113 NM_001142531:-135 AK294386:-135 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=7 | ||
|distance_to_tss=119 | |distance_to_tss=119 | ||
| + | |end=127762305 | ||
|entrez_id=10044 | |entrez_id=10044 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
|gene_alias=CHAT|NSP3|PRO34088|SHEP1 | |gene_alias=CHAT|NSP3|PRO34088|SHEP1 | ||
|gene_description=SH2 domain containing 3C | |gene_description=SH2 domain containing 3C | ||
| − | |gene_name=SH2D3C | + | |gene_id=10044 |
| + | |gene_name=SH2 domain containing 3C | ||
| + | |gene_source=HGNC:16884 | ||
| + | |gene_symbol=SH2D3C | ||
| + | |gene_synonyms=NSP3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16884 | ||
|nearest_ensembl=ENSG00000095370 | |nearest_ensembl=ENSG00000095370 | ||
|nearest_promoter_id=NM_001142532 | |nearest_promoter_id=NM_001142532 | ||
|nearest_refseq=NM_005489 | |nearest_refseq=NM_005489 | ||
|nearest_unigene=Hs.306412 | |nearest_unigene=Hs.306412 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=127762293 | ||
| + | |strand=- | ||
|tata_box="-30(GCATTTAAGGCC,+,0.00)" | |tata_box="-30(GCATTTAAGGCC,+,0.00)" | ||
| + | |transcript_name=ENST00000488685.1 uc064vxg.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102568.1 | |tss_id=hg_102568.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:32, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000488685.1 uc064vxg.1 |
|---|---|
| Distance: | 7 |
| Num_trans: | 13 |
| All_trans: | ENST00000488685.1:7 uc064vxg.1:7 AY358089:8 ENST00000464239.5:106 uc064vxf.1:106 ENST00000440630.5:-111 uc064vxe.1:-111 ENST00000429553.5:-113 NM_001142532:-113 uc004brz.5:-113 AK311510:-113 NM_001142531:-135 AK294386:-135 |
TATA-Box annotation
| Distance to TSS: | 119 |
|---|---|
| Nearest PromoterID: | NM_001142532 |
| Entrez ID: | 10044 |
| Nearest Unigene: | Hs.306412 |
| Nearest Refseq: | NM_005489 |
| Nearest Ensembl: | ENSG00000095370 |
| Gene Name: | SH2 domain containing 3C |
| Gene Alias: | CHAT |
| Gene Description: | SH2 domain containing 3C |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-30(GCATTTAAGGCC,+,0.00)" |
