Difference between revisions of "TSS:Hg 102570.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=64 |entrez_id=10044 |gc_percent=0.706468 |gene_alias=CHAT|NSP3|PRO34088|SHEP1 |gene_description=SH2 domain containing 3C |gene_n...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |NSP3= | ||
| + | |PRO34088= | ||
| + | |SHEP1= | ||
| + | |all_trans=BX647905:0 AK292041:0 AF124251:8 AY358440:10 ENST00000373276.7:-38 NM_001252334:-38 NM_005489:-38 uc004bsb.4:-38 BC027962:40 JF432256:49 KJ898142:49 CU693348:49 ENST00000373277.8:-107 uc004bsa.4:-107 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=0 | ||
|distance_to_tss=64 | |distance_to_tss=64 | ||
| + | |end=127771331 | ||
|entrez_id=10044 | |entrez_id=10044 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=CHAT|NSP3|PRO34088|SHEP1 | |gene_alias=CHAT|NSP3|PRO34088|SHEP1 | ||
|gene_description=SH2 domain containing 3C | |gene_description=SH2 domain containing 3C | ||
| − | |gene_name=SH2D3C | + | |gene_id=10044 |
| + | |gene_name=SH2 domain containing 3C | ||
| + | |gene_source=HGNC:16884 | ||
| + | |gene_symbol=SH2D3C | ||
| + | |gene_synonyms=NSP3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16884 | ||
|nearest_ensembl=ENSG00000095370 | |nearest_ensembl=ENSG00000095370 | ||
|nearest_promoter_id=NM_001252334 | |nearest_promoter_id=NM_001252334 | ||
|nearest_refseq=NM_005489 | |nearest_refseq=NM_005489 | ||
|nearest_unigene=Hs.306412 | |nearest_unigene=Hs.306412 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=127771279 | ||
| + | |strand=- | ||
| + | |transcript_name=BX647905 AK292041 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102570.1 | |tss_id=hg_102570.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A8K7M6 | ||
}} | }} | ||
Revision as of 19:32, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BX647905 AK292041 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | BX647905:0 AK292041:0 AF124251:8 AY358440:10 ENST00000373276.7:-38 NM_001252334:-38 NM_005489:-38 uc004bsb.4:-38 BC027962:40 JF432256:49 KJ898142:49 CU693348:49 ENST00000373277.8:-107 uc004bsa.4:-107 |
TATA-Box annotation
| Distance to TSS: | 64 |
|---|---|
| Nearest PromoterID: | NM_001252334 |
| Entrez ID: | 10044 |
| Nearest Unigene: | Hs.306412 |
| Nearest Refseq: | NM_005489 |
| Nearest Ensembl: | ENSG00000095370 |
| Gene Name: | SH2 domain containing 3C |
| Gene Alias: | CHAT |
| Gene Description: | SH2 domain containing 3C |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
