Difference between revisions of "TSS:Hg 10260.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=88 |entrez_id=1676 |gc_percent=0.656716 |gene_alias=DFF-45|DFF1|ICAD |gene_description=DNA fragmentation factor subunit alpha |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DFF1= | ||
| + | |ICAD= | ||
| + | |all_trans=BC000037:-6 AF103799:-7 BT006980:8 KJ896700:8 AB590590:8 CU675773:8 ENST00000476658.5:-9 uc057cdb.1:-9 ENST00000377036.2:-18 uc001ark.4:-18 BC007721:-18 AF087573:-18 AK313317:-20 AK222546:-22 U91985:-44 ENST00000377038.7:-56 uc001arj.4:-56 BC007112:-56 NM_213566:-86 NM_004401:-86 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=-6 | ||
|distance_to_tss=88 | |distance_to_tss=88 | ||
| + | |end=10472470 | ||
|entrez_id=1676 | |entrez_id=1676 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=DFF-45|DFF1|ICAD | |gene_alias=DFF-45|DFF1|ICAD | ||
|gene_description=DNA fragmentation factor subunit alpha | |gene_description=DNA fragmentation factor subunit alpha | ||
| − | |gene_name=DFFA | + | |gene_id=1676 |
| + | |gene_name=DNA fragmentation factor subunit alpha | ||
| + | |gene_source=HGNC:2772 | ||
| + | |gene_symbol=DFFA | ||
| + | |gene_synonyms=DFF-45 DFF1 DFF45 ICAD | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2772 | ||
|nearest_ensembl=ENSG00000160049 | |nearest_ensembl=ENSG00000160049 | ||
|nearest_promoter_id=NM_213566 | |nearest_promoter_id=NM_213566 | ||
|nearest_refseq=NM_004401 | |nearest_refseq=NM_004401 | ||
|nearest_unigene=Hs.484782 | |nearest_unigene=Hs.484782 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=10472465 | ||
| + | |strand=- | ||
| + | |transcript_name=BC000037 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10260.1 | |tss_id=hg_10260.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:33, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC000037 |
|---|---|
| Distance: | -6 |
| Num_trans: | 20 |
| All_trans: | BC000037:-6 AF103799:-7 BT006980:8 KJ896700:8 AB590590:8 CU675773:8 ENST00000476658.5:-9 uc057cdb.1:-9 ENST00000377036.2:-18 uc001ark.4:-18 BC007721:-18 AF087573:-18 AK313317:-20 AK222546:-22 U91985:-44 ENST00000377038.7:-56 uc001arj.4:-56 BC007112:-56 NM_213566:-86 NM_004401:-86 |
TATA-Box annotation
| Distance to TSS: | 88 |
|---|---|
| Nearest PromoterID: | NM_213566 |
| Entrez ID: | 1676 |
| Nearest Unigene: | Hs.484782 |
| Nearest Refseq: | NM_004401 |
| Nearest Ensembl: | ENSG00000160049 |
| Gene Name: | DNA fragmentation factor subunit alpha |
| Gene Alias: | DFF-45 |
| Gene Description: | DNA fragmentation factor subunit alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
