Difference between revisions of "TSS:Hg 102612.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=49 |entrez_id=30815 |gc_percent=0.616915 |gene_alias=SIAT7-F|SIAT7F|ST6GALNACVI |gene_description="ST6 N-acetylgalactosaminide a...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SIAT7F= | ||
| + | |ST6GALNACVI= | ||
| + | |all_trans=ENST00000542456.5:-38 ENST00000373141.5:-38 NM_001287001:-38 NM_001287003:-38 uc011man.2:-38 uc004bsn.3:-38 AK057100:-38 AK300534:59 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-38 | ||
|distance_to_tss=49 | |distance_to_tss=49 | ||
| + | |end=127897370 | ||
|entrez_id=30815 | |entrez_id=30815 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
|gene_alias=SIAT7-F|SIAT7F|ST6GALNACVI | |gene_alias=SIAT7-F|SIAT7F|ST6GALNACVI | ||
|gene_description="ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6" | |gene_description="ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6" | ||
| − | |gene_name=ST6GALNAC6 | + | |gene_id=30815 |
| + | |gene_name="ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6" | ||
| + | |gene_source=HGNC:23364 | ||
| + | |gene_symbol=ST6GALNAC6 | ||
| + | |gene_synonyms=ST6GALNACVI | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23364 | ||
|nearest_ensembl=ENSG00000160408 | |nearest_ensembl=ENSG00000160408 | ||
|nearest_promoter_id=NM_001287003 | |nearest_promoter_id=NM_001287003 | ||
|nearest_refseq=NM_013443 | |nearest_refseq=NM_013443 | ||
|nearest_unigene=Hs.109672 | |nearest_unigene=Hs.109672 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=127897348 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000542456.5 ENST00000373141.5 NM_001287001 NM_001287003 uc011man.2 uc004bsn.3 AK057100 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102612.1 | |tss_id=hg_102612.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R8C6 F6SGE3 Q969X2 | ||
}} | }} | ||
Revision as of 19:34, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000542456.5 ENST00000373141.5 NM_001287001 NM_001287003 uc011man.2 uc004bsn.3 AK057100 |
|---|---|
| Distance: | -38 |
| Num_trans: | 8 |
| All_trans: | ENST00000542456.5:-38 ENST00000373141.5:-38 NM_001287001:-38 NM_001287003:-38 uc011man.2:-38 uc004bsn.3:-38 AK057100:-38 AK300534:59 |
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NM_001287003 |
| Entrez ID: | 30815 |
| Nearest Unigene: | Hs.109672 |
| Nearest Refseq: | NM_013443 |
| Nearest Ensembl: | ENSG00000160408 |
| Gene Name: | "ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6" |
| Gene Alias: | SIAT7-F |
| Gene Description: | "ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6" |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
