Difference between revisions of "TSS:Hg 102615.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.165 |distance_to_tss=-6 |entrez_id=30815 |gc_percent=0.845771 |gene_alias=SIAT7-F|SIAT7F|ST6GALNACVI |gene_description="ST6 N-acetylgalactosaminide...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SIAT7F= | ||
| + | |ST6GALNACVI= | ||
| + | |all_trans=ENST00000373146.5:0 ENST00000373142.5:0 ENST00000373144.7:0 NM_001286999:0 NM_013443:0 NM_001287000:0 uc004bso.3:0 uc004bsp.3:0 uc004bsq.3:0 BC036102:24 ENST00000480417.5:32 uc064vyt.1:32 ENST00000494541.5:34 uc064vyv.1:34 AK023900:40 ENST00000463086.5:45 uc064vys.1:45 BC007802:46 BC016299:46 ENST00000485320.5:64 uc064vyr.1:64 BC006564:73 ENST00000478319.5:103 uc064vyx.1:103 AK226174:109 ENST00000481355.5:222 uc064vyw.1:222 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| + | |distance=0 | ||
|distance_to_tss=-6 | |distance_to_tss=-6 | ||
| + | |end=127899671 | ||
|entrez_id=30815 | |entrez_id=30815 | ||
|gc_percent=0.845771 | |gc_percent=0.845771 | ||
|gene_alias=SIAT7-F|SIAT7F|ST6GALNACVI | |gene_alias=SIAT7-F|SIAT7F|ST6GALNACVI | ||
|gene_description="ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6" | |gene_description="ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6" | ||
| − | |gene_name=ST6GALNAC6 | + | |gene_id=30815 |
| + | |gene_name="ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6" | ||
| + | |gene_source=HGNC:23364 | ||
| + | |gene_symbol=ST6GALNAC6 | ||
| + | |gene_synonyms=ST6GALNACVI | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23364 | ||
|nearest_ensembl=ENSG00000160408 | |nearest_ensembl=ENSG00000160408 | ||
|nearest_promoter_id=NM_001286999 | |nearest_promoter_id=NM_001286999 | ||
|nearest_refseq=NM_013443 | |nearest_refseq=NM_013443 | ||
|nearest_unigene=Hs.109672 | |nearest_unigene=Hs.109672 | ||
| + | |num_trans=27 | ||
| + | |species=human | ||
| + | |start=127899637 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000373146.5 ENST00000373142.5 ENST00000373144.7 NM_001286999 NM_013443 NM_001287000 uc004bso.3 uc004bsp.3 uc004bsq.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102615.1 | |tss_id=hg_102615.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R8C6 Q969X2 | ||
}} | }} | ||
Revision as of 19:34, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000373146.5 ENST00000373142.5 ENST00000373144.7 NM_001286999 NM_013443 NM_001287000 uc004bso.3 uc004bsp.3 uc004bsq.3 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000373146.5:0 ENST00000373142.5:0 ENST00000373144.7:0 NM_001286999:0 NM_013443:0 NM_001287000:0 uc004bso.3:0 uc004bsp.3:0 uc004bsq.3:0 BC036102:24 ENST00000480417.5:32 uc064vyt.1:32 ENST00000494541.5:34 uc064vyv.1:34 AK023900:40 ENST00000463086.5:45 uc064vys.1:45 BC007802:46 BC016299:46 ENST00000485320.5:64 uc064vyr.1:64 BC006564:73 ENST00000478319.5:103 uc064vyx.1:103 AK226174:109 ENST00000481355.5:222 uc064vyw.1:222 |
TATA-Box annotation
| Distance to TSS: | -6 |
|---|---|
| Nearest PromoterID: | NM_001286999 |
| Entrez ID: | 30815 |
| Nearest Unigene: | Hs.109672 |
| Nearest Refseq: | NM_013443 |
| Nearest Ensembl: | ENSG00000160408 |
| Gene Name: | "ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6" |
| Gene Alias: | SIAT7-F |
| Gene Description: | "ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6" |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.845771 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
