Difference between revisions of "TSS:Hg 10262.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=4 |entrez_id=1676 |gc_percent=0.621891 |gene_alias=DFF-45|DFF1|ICAD |gene_description=DNA fragmentation factor subunit alpha |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DFF1= | ||
| + | |ICAD= | ||
| + | |all_trans=NM_213566:0 NM_004401:0 ENST00000377038.7:13 uc001arj.4:13 BC007112:13 U91985:25 AK222546:47 AK313317:49 ENST00000377036.2:51 uc001ark.4:51 BC007721:51 AF087573:51 ENST00000476658.5:60 uc057cdb.1:60 AF103799:62 BC000037:63 BT006980:81 KJ896700:81 AB590590:81 CU675773:81 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=4 | |distance_to_tss=4 | ||
| + | |end=10472566 | ||
|entrez_id=1676 | |entrez_id=1676 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
|gene_alias=DFF-45|DFF1|ICAD | |gene_alias=DFF-45|DFF1|ICAD | ||
|gene_description=DNA fragmentation factor subunit alpha | |gene_description=DNA fragmentation factor subunit alpha | ||
| − | |gene_name=DFFA | + | |gene_id=1676 |
| + | |gene_name=DNA fragmentation factor subunit alpha | ||
| + | |gene_source=HGNC:2772 | ||
| + | |gene_symbol=DFFA | ||
| + | |gene_synonyms=DFF-45 DFF1 DFF45 ICAD | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2772 | ||
|nearest_ensembl=ENSG00000160049 | |nearest_ensembl=ENSG00000160049 | ||
|nearest_promoter_id=NM_213566 | |nearest_promoter_id=NM_213566 | ||
|nearest_refseq=NM_004401 | |nearest_refseq=NM_004401 | ||
|nearest_unigene=Hs.484782 | |nearest_unigene=Hs.484782 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=10472538 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_213566 NM_004401 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10262.1 | |tss_id=hg_10262.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O00273 | ||
}} | }} | ||
Revision as of 19:34, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_213566 NM_004401 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | NM_213566:0 NM_004401:0 ENST00000377038.7:13 uc001arj.4:13 BC007112:13 U91985:25 AK222546:47 AK313317:49 ENST00000377036.2:51 uc001ark.4:51 BC007721:51 AF087573:51 ENST00000476658.5:60 uc057cdb.1:60 AF103799:62 BC000037:63 BT006980:81 KJ896700:81 AB590590:81 CU675773:81 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_213566 |
| Entrez ID: | 1676 |
| Nearest Unigene: | Hs.484782 |
| Nearest Refseq: | NM_004401 |
| Nearest Ensembl: | ENSG00000160049 |
| Gene Name: | DNA fragmentation factor subunit alpha |
| Gene Alias: | DFF-45 |
| Gene Description: | DNA fragmentation factor subunit alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
