Difference between revisions of "TSS:Hg 102620.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=8 |entrez_id=27090 |gc_percent=0.800995 |gene_alias=IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc |gene_description="ST...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SIAT3-C= | ||
| + | |SIAT3C= | ||
| + | |SIAT7-D= | ||
| + | |SIAT7D= | ||
| + | |ST6GALNACIV= | ||
| + | |ST6GalNAc= | ||
| + | |all_trans=ENST00000335791.9:0 ENST00000467674.5:0 ENST00000361444.3:0 ENST00000479747.1:0 NM_175039:0 NM_175040:0 uc004bss.3:0 uc064vzc.1:0 uc064vzd.1:0 uc064vzf.1:0 AK292049:0 AK000600:0 AJ271734:0 BC036705:47 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=0 | ||
|distance_to_tss=8 | |distance_to_tss=8 | ||
| + | |end=127917057 | ||
|entrez_id=27090 | |entrez_id=27090 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
|gene_alias=IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc | |gene_alias=IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc | ||
|gene_description="ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4" | |gene_description="ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4" | ||
| − | |gene_name=ST6GALNAC4 | + | |gene_id=27090 |
| + | |gene_name="ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4" | ||
| + | |gene_source=HGNC:17846 | ||
| + | |gene_symbol=ST6GALNAC4 | ||
| + | |gene_synonyms=SIAT3C ST6GALNACIV | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17846 | ||
|nearest_ensembl=ENSG00000136840 | |nearest_ensembl=ENSG00000136840 | ||
|nearest_promoter_id=NM_175039 | |nearest_promoter_id=NM_175039 | ||
|nearest_refseq=NM_014403 | |nearest_refseq=NM_014403 | ||
|nearest_unigene=Hs.3972 | |nearest_unigene=Hs.3972 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=127916978 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000335791.9 ENST00000467674.5 ENST00000361444.3 ENST00000479747.1 NM_175039 NM_175040 uc004bss.3 uc064vzc.1 uc064vzd.1 uc064vzf.1 AK292049 AK000600 AJ271734 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102620.1 | |tss_id=hg_102620.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R881 A6NJX0 Q9H4F1 | ||
}} | }} | ||
Revision as of 19:34, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000335791.9 ENST00000467674.5 ENST00000361444.3 ENST00000479747.1 NM_175039 NM_175040 uc004bss.3 uc064vzc.1 uc064vzd.1 uc064vzf.1 AK292049 AK000600 AJ271734 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000335791.9:0 ENST00000467674.5:0 ENST00000361444.3:0 ENST00000479747.1:0 NM_175039:0 NM_175040:0 uc004bss.3:0 uc064vzc.1:0 uc064vzd.1:0 uc064vzf.1:0 AK292049:0 AK000600:0 AJ271734:0 BC036705:47 |
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NM_175039 |
| Entrez ID: | 27090 |
| Nearest Unigene: | Hs.3972 |
| Nearest Refseq: | NM_014403 |
| Nearest Ensembl: | ENSG00000136840 |
| Gene Name: | "ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4" |
| Gene Alias: | IV |
| Gene Description: | "ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4" |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
