Difference between revisions of "TSS:Hg 102648.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=40903 |entrez_id=203245 |gc_percent=0.547264 |gene_alias=C9orf90|bA379C10.2 |gene_description=nuclear apoptosis inducing factor...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |bA379C10.2= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance= | ||
|distance_to_tss=40903 | |distance_to_tss=40903 | ||
| + | |end=128026422 | ||
|entrez_id=203245 | |entrez_id=203245 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_197956 | |nearest_refseq=NM_197956 | ||
|nearest_unigene=Hs.373606 | |nearest_unigene=Hs.373606 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=128026412 | ||
| + | |strand=- | ||
|tata_box="-81(GCCCCTTAAAGG,-,0.00),-80(CCCCTTAAAGGG,+,0.00),-80(CCCCTTAAAGGG,-,0.00),-79(CCCTTAAAGGGG,+,0.00),-78(CCTTAAAGGGGA,+,0.00)" | |tata_box="-81(GCCCCTTAAAGG,-,0.00),-80(CCCCTTAAAGGG,+,0.00),-80(CCCCTTAAAGGG,-,0.00),-79(CCCTTAAAGGGG,+,0.00),-78(CCTTAAAGGGGA,+,0.00)" | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_102648.1 | |tss_id=hg_102648.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 19:35, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 40903 |
|---|---|
| Nearest PromoterID: | NM_197956 |
| Entrez ID: | 203245 |
| Nearest Unigene: | Hs.373606 |
| Nearest Refseq: | NM_197956 |
| Nearest Ensembl: | ENSG00000171169 |
| Gene Name: | NAIF1 |
| Gene Alias: | C9orf90 |
| Gene Description: | nuclear apoptosis inducing factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-81(GCCCCTTAAAGG,-,0.00),-80(CCCCTTAAAGGG,+,0.00),-80(CCCCTTAAAGGG,-,0.00),-79(CCCTTAAAGGGG,+,0.00),-78(CCTTAAAGGGGA,+,0.00)" |
