Difference between revisions of "TSS:Hg 102659.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=453 |entrez_id=80142 |gc_percent=0.766169 |gene_alias=C9orf15|GBF-1|GBF1|PGES2|mPGES-2 |gene_description=prostaglandin E synthas...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GBF-1= | ||
| + | |GBF1= | ||
| + | |PGES2= | ||
| + | |all_trans=ENST00000496594.5:0 ENST00000449878.1:0 uc064waq.1:0 uc064wav.1:0 BC009456:0 AK024100:0 AK223520:0 KJ905547:0 DQ891904:0 DQ895090:0 AB463194:0 AM392565:0 ENST00000485510.5:1 uc064waz.1:1 ENST00000483625.5:3 uc064wax.1:3 BC009397:15 ENST00000474124.5:37 uc064wau.1:37 BC011613:-138 ENST00000485237.1:-355 uc064wba.1:-355 ENST00000487063.5:-387 uc064wat.1:-387 ENST00000617202.4:-429 NM_001256335:-429 uc031tff.2:-429 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=0 | ||
|distance_to_tss=453 | |distance_to_tss=453 | ||
| + | |end=128127759 | ||
|entrez_id=80142 | |entrez_id=80142 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
|gene_alias=C9orf15|GBF-1|GBF1|PGES2|mPGES-2 | |gene_alias=C9orf15|GBF-1|GBF1|PGES2|mPGES-2 | ||
|gene_description=prostaglandin E synthase 2 | |gene_description=prostaglandin E synthase 2 | ||
| − | |gene_name=PTGES2 | + | |gene_id=80142 |
| + | |gene_name=prostaglandin E synthase 2 | ||
| + | |gene_source=HGNC:17822 | ||
| + | |gene_symbol=PTGES2 | ||
| + | |gene_synonyms=FLJ14038 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17822 | ||
| + | |mPGES-2= | ||
|nearest_ensembl=ENSG00000148334 | |nearest_ensembl=ENSG00000148334 | ||
|nearest_promoter_id=NM_001256335 | |nearest_promoter_id=NM_001256335 | ||
|nearest_refseq=NM_025072 | |nearest_refseq=NM_025072 | ||
|nearest_unigene=Hs.495219 | |nearest_unigene=Hs.495219 | ||
| + | |num_trans=27 | ||
| + | |species=human | ||
| + | |start=128127711 | ||
| + | |strand=- | ||
|tata_box="-52(CCCTTTAAACGC,+,0.00),-51(CCTTTAAACGCC,+,0.00)" | |tata_box="-52(CCCTTTAAACGC,+,0.00),-51(CCTTTAAACGCC,+,0.00)" | ||
| + | |transcript_name=ENST00000496594.5 ENST00000449878.1 uc064waq.1 uc064wav.1 BC009456 AK024100 AK223520 KJ905547 DQ891904 DQ895090 AB463194 AM392565 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102659.1 | |tss_id=hg_102659.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=X6RJ95 | ||
}} | }} | ||
Revision as of 19:35, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000496594.5 ENST00000449878.1 uc064waq.1 uc064wav.1 BC009456 AK024100 AK223520 KJ905547 DQ891904 DQ895090 AB463194 AM392565 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000496594.5:0 ENST00000449878.1:0 uc064waq.1:0 uc064wav.1:0 BC009456:0 AK024100:0 AK223520:0 KJ905547:0 DQ891904:0 DQ895090:0 AB463194:0 AM392565:0 ENST00000485510.5:1 uc064waz.1:1 ENST00000483625.5:3 uc064wax.1:3 BC009397:15 ENST00000474124.5:37 uc064wau.1:37 BC011613:-138 ENST00000485237.1:-355 uc064wba.1:-355 ENST00000487063.5:-387 uc064wat.1:-387 ENST00000617202.4:-429 NM_001256335:-429 uc031tff.2:-429 |
TATA-Box annotation
| Distance to TSS: | 453 |
|---|---|
| Nearest PromoterID: | NM_001256335 |
| Entrez ID: | 80142 |
| Nearest Unigene: | Hs.495219 |
| Nearest Refseq: | NM_025072 |
| Nearest Ensembl: | ENSG00000148334 |
| Gene Name: | prostaglandin E synthase 2 |
| Gene Alias: | C9orf15 |
| Gene Description: | prostaglandin E synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-52(CCCTTTAAACGC,+,0.00),-51(CCTTTAAACGCC,+,0.00)" |
