Difference between revisions of "TSS:Hg 102660.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=248 |entrez_id=80142 |gc_percent=0.691542 |gene_alias=C9orf15|GBF-1|GBF1|PGES2|mPGES-2 |gene_description=prostaglandin E syntha...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |GBF-1= | ||
| + | |GBF1= | ||
| + | |PGES2= | ||
| + | |all_trans=BC011613:38 ENST00000485237.1:-168 uc064wba.1:-168 ENST00000487063.5:-200 uc064wat.1:-200 AK024100:206 ENST00000449878.1:211 uc064wav.1:211 AK223520:211 KJ905547:217 DQ891904:217 DQ895090:217 AB463194:217 AM392565:217 ENST00000496594.5:218 uc064waq.1:218 BC009456:220 ENST00000485510.5:224 uc064waz.1:224 ENST00000483625.5:226 uc064wax.1:226 BC009397:238 ENST00000617202.4:-242 NM_001256335:-242 uc031tff.2:-242 ENST00000474124.5:260 uc064wau.1:260 ENST00000476748.5:-449 uc064waw.1:-449 AK301618:-449 ENST00000497109.5:-472 uc064way.1:-472 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=38 | ||
|distance_to_tss=248 | |distance_to_tss=248 | ||
| + | |end=128127946 | ||
|entrez_id=80142 | |entrez_id=80142 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=C9orf15|GBF-1|GBF1|PGES2|mPGES-2 | |gene_alias=C9orf15|GBF-1|GBF1|PGES2|mPGES-2 | ||
|gene_description=prostaglandin E synthase 2 | |gene_description=prostaglandin E synthase 2 | ||
| − | |gene_name=PTGES2 | + | |gene_id=80142 |
| + | |gene_name=prostaglandin E synthase 2 | ||
| + | |gene_source=HGNC:17822 | ||
| + | |gene_symbol=PTGES2 | ||
| + | |gene_synonyms=FLJ14038 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17822 | ||
| + | |mPGES-2= | ||
|nearest_ensembl=ENSG00000148334 | |nearest_ensembl=ENSG00000148334 | ||
|nearest_promoter_id=NM_001256335 | |nearest_promoter_id=NM_001256335 | ||
|nearest_refseq=NM_025072 | |nearest_refseq=NM_025072 | ||
|nearest_unigene=Hs.495219 | |nearest_unigene=Hs.495219 | ||
| + | |num_trans=32 | ||
| + | |species=human | ||
| + | |start=128127934 | ||
| + | |strand=- | ||
|tata_box="-89(CCCTTTAGGCGG,+,0.00)" | |tata_box="-89(CCCTTTAGGCGG,+,0.00)" | ||
| + | |transcript_name=BC011613 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102660.1 | |tss_id=hg_102660.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:36, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC011613 |
|---|---|
| Distance: | 38 |
| Num_trans: | 32 |
| All_trans: | BC011613:38 ENST00000485237.1:-168 uc064wba.1:-168 ENST00000487063.5:-200 uc064wat.1:-200 AK024100:206 ENST00000449878.1:211 uc064wav.1:211 AK223520:211 KJ905547:217 DQ891904:217 DQ895090:217 AB463194:217 AM392565:217 ENST00000496594.5:218 uc064waq.1:218 BC009456:220 ENST00000485510.5:224 uc064waz.1:224 ENST00000483625.5:226 uc064wax.1:226 BC009397:238 ENST00000617202.4:-242 NM_001256335:-242 uc031tff.2:-242 ENST00000474124.5:260 uc064wau.1:260 ENST00000476748.5:-449 uc064waw.1:-449 AK301618:-449 ENST00000497109.5:-472 uc064way.1:-472 |
TATA-Box annotation
| Distance to TSS: | 248 |
|---|---|
| Nearest PromoterID: | NM_001256335 |
| Entrez ID: | 80142 |
| Nearest Unigene: | Hs.495219 |
| Nearest Refseq: | NM_025072 |
| Nearest Ensembl: | ENSG00000148334 |
| Gene Name: | prostaglandin E synthase 2 |
| Gene Alias: | C9orf15 |
| Gene Description: | prostaglandin E synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-89(CCCTTTAGGCGG,+,0.00)" |
