Difference between revisions of "TSS:Hg 102661.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=72 |entrez_id=80142 |gc_percent=0.621891 |gene_alias=C9orf15|GBF-1|GBF1|PGES2|mPGES-2 |gene_description=prostaglandin E synthase...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GBF-1= | ||
| + | |GBF1= | ||
| + | |PGES2= | ||
| + | |all_trans=ENST00000485237.1:0 uc064wba.1:0 ENST00000487063.5:-15 uc064wat.1:-15 ENST00000617202.4:-57 NM_001256335:-57 uc031tff.2:-57 BC011613:205 ENST00000476748.5:-264 uc064waw.1:-264 AK301618:-264 ENST00000497109.5:-287 uc064way.1:-287 ENST00000338961.10:-331 ENST00000277462.9:-331 NM_198938:-331 NM_025072:-331 uc004bti.4:-331 uc004btk.5:-331 AK057049:-331 AK024100:373 ENST00000449878.1:378 uc064wav.1:378 AK223520:378 KJ905547:384 DQ891904:384 DQ895090:384 AB463194:384 AM392565:384 ENST00000496594.5:385 uc064waq.1:385 BC009456:387 ENST00000485510.5:391 uc064waz.1:391 ENST00000483625.5:393 uc064wax.1:393 BC009397:405 ENST00000474124.5:427 uc064wau.1:427 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=0 | ||
|distance_to_tss=72 | |distance_to_tss=72 | ||
| + | |end=128128131 | ||
|entrez_id=80142 | |entrez_id=80142 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
|gene_alias=C9orf15|GBF-1|GBF1|PGES2|mPGES-2 | |gene_alias=C9orf15|GBF-1|GBF1|PGES2|mPGES-2 | ||
|gene_description=prostaglandin E synthase 2 | |gene_description=prostaglandin E synthase 2 | ||
| − | |gene_name=PTGES2 | + | |gene_id=80142 |
| + | |gene_name=prostaglandin E synthase 2 | ||
| + | |gene_source=HGNC:17822 | ||
| + | |gene_symbol=PTGES2 | ||
| + | |gene_synonyms=FLJ14038 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17822 | ||
| + | |mPGES-2= | ||
|nearest_ensembl=ENSG00000148334 | |nearest_ensembl=ENSG00000148334 | ||
|nearest_promoter_id=NM_001256335 | |nearest_promoter_id=NM_001256335 | ||
|nearest_refseq=NM_025072 | |nearest_refseq=NM_025072 | ||
|nearest_unigene=Hs.495219 | |nearest_unigene=Hs.495219 | ||
| + | |num_trans=39 | ||
| + | |species=human | ||
| + | |start=128128101 | ||
| + | |strand=- | ||
|tata_box="87(CCCTTTAGGCGG,+,0.00)" | |tata_box="87(CCCTTTAGGCGG,+,0.00)" | ||
| + | |transcript_name=ENST00000485237.1 uc064wba.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102661.1 | |tss_id=hg_102661.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:36, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000485237.1 uc064wba.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 39 |
| All_trans: | ENST00000485237.1:0 uc064wba.1:0 ENST00000487063.5:-15 uc064wat.1:-15 ENST00000617202.4:-57 NM_001256335:-57 uc031tff.2:-57 BC011613:205 ENST00000476748.5:-264 uc064waw.1:-264 AK301618:-264 ENST00000497109.5:-287 uc064way.1:-287 ENST00000338961.10:-331 ENST00000277462.9:-331 NM_198938:-331 NM_025072:-331 uc004bti.4:-331 uc004btk.5:-331 AK057049:-331 AK024100:373 ENST00000449878.1:378 uc064wav.1:378 AK223520:378 KJ905547:384 DQ891904:384 DQ895090:384 AB463194:384 AM392565:384 ENST00000496594.5:385 uc064waq.1:385 BC009456:387 ENST00000485510.5:391 uc064waz.1:391 ENST00000483625.5:393 uc064wax.1:393 BC009397:405 ENST00000474124.5:427 uc064wau.1:427 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_001256335 |
| Entrez ID: | 80142 |
| Nearest Unigene: | Hs.495219 |
| Nearest Refseq: | NM_025072 |
| Nearest Ensembl: | ENSG00000148334 |
| Gene Name: | prostaglandin E synthase 2 |
| Gene Alias: | C9orf15 |
| Gene Description: | prostaglandin E synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "87(CCCTTTAGGCGG,+,0.00)" |
