Difference between revisions of "TSS:Hg 10267.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=102302 |entrez_id=54897 |gc_percent=0.492537 |gene_alias=CAS11|CST|SRG|ZNF693|dJ734G22.1 |gene_description=castor zinc finger 1...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CST= | ||
| + | |SRG= | ||
| + | |ZNF693= | ||
| + | |all_trans=AK311700:-72 AK293839:-73 ENST00000496432.6:-102 uc009vmx.3:-102 ENST00000478728.2:460 uc057cdk.1:460 BC051883:467 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| + | |dJ734G22.1= | ||
| + | |distance=-72 | ||
|distance_to_tss=102302 | |distance_to_tss=102302 | ||
| + | |end=10694377 | ||
|entrez_id=54897 | |entrez_id=54897 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
|gene_alias=CAS11|CST|SRG|ZNF693|dJ734G22.1 | |gene_alias=CAS11|CST|SRG|ZNF693|dJ734G22.1 | ||
|gene_description=castor zinc finger 1 | |gene_description=castor zinc finger 1 | ||
| − | |gene_name=CASZ1 | + | |gene_id=54897 |
| + | |gene_name=castor zinc finger 1 | ||
| + | |gene_source=HGNC:26002 | ||
| + | |gene_symbol=CASZ1 | ||
| + | |gene_synonyms=FLJ20321 SRG ZNF693 castor cst | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26002 | ||
|nearest_ensembl=ENSG00000130940 | |nearest_ensembl=ENSG00000130940 | ||
|nearest_promoter_id=NM_001079843 | |nearest_promoter_id=NM_001079843 | ||
|nearest_refseq=NM_017766 | |nearest_refseq=NM_017766 | ||
|nearest_unigene=Hs.439894 | |nearest_unigene=Hs.439894 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=10694371 | ||
| + | |strand=- | ||
|tata_box="-32(GCTTTAAAACAA,+,0.00)" | |tata_box="-32(GCTTTAAAACAA,+,0.00)" | ||
| + | |transcript_name=AK311700 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10267.1 | |tss_id=hg_10267.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:36, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK311700 |
|---|---|
| Distance: | -72 |
| Num_trans: | 7 |
| All_trans: | AK311700:-72 AK293839:-73 ENST00000496432.6:-102 uc009vmx.3:-102 ENST00000478728.2:460 uc057cdk.1:460 BC051883:467 |
TATA-Box annotation
| Distance to TSS: | 102302 |
|---|---|
| Nearest PromoterID: | NM_001079843 |
| Entrez ID: | 54897 |
| Nearest Unigene: | Hs.439894 |
| Nearest Refseq: | NM_017766 |
| Nearest Ensembl: | ENSG00000130940 |
| Gene Name: | castor zinc finger 1 |
| Gene Alias: | CAS11 |
| Gene Description: | castor zinc finger 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(GCTTTAAAACAA,+,0.00)" |
