Difference between revisions of "TSS:Hg 102686.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=-77 |entrez_id=51117 |gc_percent=0.60199 |gene_alias=CGI-92|COQ10D7 |gene_description=coenzyme Q4 |gene_name=COQ4 |gene_type=pro...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |COQ10D7= | ||
| + | |all_trans=ENST00000460320.1:0 NM_015679:0 uc064wdm.1:0 AJ420462:0 AF131848:0 AK001956:0 BC001457:0 DQ892156:0 DQ895351:0 CU674714:0 KJ893586:3 AK301986:190 ENST00000372890.5:-287 uc004buq.2:-287 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=0 | ||
|distance_to_tss=-77 | |distance_to_tss=-77 | ||
| + | |end=128322455 | ||
|entrez_id=51117 | |entrez_id=51117 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
|gene_alias=CGI-92|COQ10D7 | |gene_alias=CGI-92|COQ10D7 | ||
|gene_description=coenzyme Q4 | |gene_description=coenzyme Q4 | ||
| − | |gene_name= | + | |gene_id=26995 |
| + | |gene_name=TruB pseudouridine (psi) synthase family member 2 | ||
| + | |gene_source=HGNC:17170 | ||
| + | |gene_symbol=TRUB2 | ||
| + | |gene_synonyms=CLONE24922 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17170 | ||
|nearest_ensembl=ENSG00000167113 | |nearest_ensembl=ENSG00000167113 | ||
|nearest_promoter_id=NM_016035 | |nearest_promoter_id=NM_016035 | ||
|nearest_refseq=NM_016035 | |nearest_refseq=NM_016035 | ||
|nearest_unigene=Hs.98541 | |nearest_unigene=Hs.98541 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=128322407 | ||
| + | |strand=- | ||
|tata_box="-100(GACTATAAAATG,-,0.00),63(CGGTCTATAAGC,-,0.00)" | |tata_box="-100(GACTATAAAATG,-,0.00),63(CGGTCTATAAGC,-,0.00)" | ||
| + | |transcript_name=ENST00000460320.1 NM_015679 uc064wdm.1 AJ420462 AF131848 AK001956 BC001457 DQ892156 DQ895351 CU674714 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102686.1 | |tss_id=hg_102686.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O95900 | ||
}} | }} | ||
Revision as of 19:37, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000460320.1 NM_015679 uc064wdm.1 AJ420462 AF131848 AK001956 BC001457 DQ892156 DQ895351 CU674714 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000460320.1:0 NM_015679:0 uc064wdm.1:0 AJ420462:0 AF131848:0 AK001956:0 BC001457:0 DQ892156:0 DQ895351:0 CU674714:0 KJ893586:3 AK301986:190 ENST00000372890.5:-287 uc004buq.2:-287 |
TATA-Box annotation
| Distance to TSS: | -77 |
|---|---|
| Nearest PromoterID: | NM_016035 |
| Entrez ID: | 51117 |
| Nearest Unigene: | Hs.98541 |
| Nearest Refseq: | NM_016035 |
| Nearest Ensembl: | ENSG00000167113 |
| Gene Name: | TruB pseudouridine (psi) synthase family member 2 |
| Gene Alias: | CGI-92 |
| Gene Description: | coenzyme Q4 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-100(GACTATAAAATG,-,0.00),63(CGGTCTATAAGC,-,0.00)" |
