Difference between revisions of "TSS:Hg 102713.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=17 |entrez_id=883 |gc_percent=0.671642 |gene_alias=CCBL1|GTK|KAT1|KATI |gene_description=kynurenine aminotransferase 1 |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GTK= | ||
| + | |KAT1= | ||
| + | |KATI= | ||
| + | |all_trans=ENST00000462722.5:0 ENST00000436267.6:0 ENST00000302586.7:0 NM_001287390:0 NR_109829:0 NM_001122672:0 NM_001122671:0 NM_004059:0 uc004bwi.5:0 uc011mbl.3:0 uc004bwh.5:0 BC021262:0 AK291178:0 BC022468:0 ENST00000474824.1:83 uc064whf.1:83 AK314427:84 AK297995:97 ENST00000320665.10:99 uc004bwj.5:99 BC033685:99 ENST00000451800.5:-405 uc064whd.1:-405 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=0 | ||
|distance_to_tss=17 | |distance_to_tss=17 | ||
| + | |end=128882089 | ||
|entrez_id=883 | |entrez_id=883 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=CCBL1|GTK|KAT1|KATI | |gene_alias=CCBL1|GTK|KAT1|KATI | ||
|gene_description=kynurenine aminotransferase 1 | |gene_description=kynurenine aminotransferase 1 | ||
| − | |gene_name= | + | |gene_id=883 |
| + | |gene_name="cysteine conjugate-beta lyase, cytoplasmic" | ||
| + | |gene_source=HGNC:1564 | ||
| + | |gene_symbol=CCBL1 | ||
| + | |gene_synonyms=GTK KATI | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1564 | ||
|nearest_ensembl=ENSG00000171097 | |nearest_ensembl=ENSG00000171097 | ||
|nearest_promoter_id=NM_001287390 | |nearest_promoter_id=NM_001287390 | ||
|nearest_refseq=NM_004059 | |nearest_refseq=NM_004059 | ||
|nearest_unigene=Hs.495250 | |nearest_unigene=Hs.495250 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=128882027 | ||
| + | |strand=- | ||
|tata_box="86(CCCCCTTAAAGG,-,0.00),87(CCCCTTAAAGGG,+,0.00),87(CCCCTTAAAGGG,-,0.00),88(CCCTTAAAGGGA,+,0.00),89(CCTTAAAGGGAC,+,0.00)" | |tata_box="86(CCCCCTTAAAGG,-,0.00),87(CCCCTTAAAGGG,+,0.00),87(CCCCTTAAAGGG,-,0.00),88(CCCTTAAAGGGA,+,0.00),89(CCTTAAAGGGAC,+,0.00)" | ||
| + | |transcript_name=ENST00000462722.5 ENST00000436267.6 ENST00000302586.7 NM_001287390 NR_109829 NM_001122672 NM_001122671 NM_004059 uc004bwi.5 uc011mbl.3 uc004bwh.5 BC021262 AK291178 BC022468 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102713.1 | |tss_id=hg_102713.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A8K563 B7Z4W5 Q16773 | ||
}} | }} | ||
Revision as of 19:38, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000462722.5 ENST00000436267.6 ENST00000302586.7 NM_001287390 NR_109829 NM_001122672 NM_001122671 NM_004059 uc004bwi.5 uc011mbl.3 uc004bwh.5 BC021262 AK291178 BC022468 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000462722.5:0 ENST00000436267.6:0 ENST00000302586.7:0 NM_001287390:0 NR_109829:0 NM_001122672:0 NM_001122671:0 NM_004059:0 uc004bwi.5:0 uc011mbl.3:0 uc004bwh.5:0 BC021262:0 AK291178:0 BC022468:0 ENST00000474824.1:83 uc064whf.1:83 AK314427:84 AK297995:97 ENST00000320665.10:99 uc004bwj.5:99 BC033685:99 ENST00000451800.5:-405 uc064whd.1:-405 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_001287390 |
| Entrez ID: | 883 |
| Nearest Unigene: | Hs.495250 |
| Nearest Refseq: | NM_004059 |
| Nearest Ensembl: | ENSG00000171097 |
| Gene Name: | "cysteine conjugate-beta lyase, cytoplasmic" |
| Gene Alias: | CCBL1 |
| Gene Description: | kynurenine aminotransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "86(CCCCCTTAAAGG,-,0.00),87(CCCCTTAAAGGG,+,0.00),87(CCCCTTAAAGGG,-,0.00),88(CCCTTAAAGGGA,+,0.00),89(CCTTAAAGGGAC,+,0.00)" |
