Difference between revisions of "TSS:Hg 102722.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.16 |distance_to_tss=40 |entrez_id=56904 |gc_percent=0.850746 |gene_alias=PP6569|PP9455|RRIG1 |gene_description=SH3 domain containing GRB2 like endop...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PP9455= | ||
| + | |RRIG1= | ||
| + | |all_trans=ENST00000372564.7:0 ENST00000372554.8:0 ENST00000455407.5:0 ENST00000483980.5:0 NM_001287046:0 NM_001287045:0 NM_020145:0 uc004bwv.5:0 uc004bww.5:0 uc064wij.1:0 uc064wik.1:0 BC014635:0 AB058751:0 AF258589:6 ENST00000372559.5:58 uc033diq.2:58 AF257319:58 ENST00000416629.5:62 uc064wii.1:62 ENST00000416230.1:74 uc064win.1:74 ENST00000417224.5:87 uc064wih.1:87 AB384306:116 EU832345:116 EU832430:116 KJ894359:117 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| + | |distance=0 | ||
|distance_to_tss=40 | |distance_to_tss=40 | ||
| + | |end=129028355 | ||
|entrez_id=56904 | |entrez_id=56904 | ||
|gc_percent=0.850746 | |gc_percent=0.850746 | ||
|gene_alias=PP6569|PP9455|RRIG1 | |gene_alias=PP6569|PP9455|RRIG1 | ||
|gene_description=SH3 domain containing GRB2 like endophilin B2 | |gene_description=SH3 domain containing GRB2 like endophilin B2 | ||
| − | |gene_name=SH3GLB2 | + | |gene_id=56904 |
| + | |gene_name=SH3-domain GRB2-like endophilin B2 | ||
| + | |gene_source=HGNC:10834 | ||
| + | |gene_symbol=SH3GLB2 | ||
| + | |gene_synonyms=KIAA1848 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10834 | ||
|nearest_ensembl=ENSG00000148341 | |nearest_ensembl=ENSG00000148341 | ||
|nearest_promoter_id=NM_020145 | |nearest_promoter_id=NM_020145 | ||
|nearest_refseq=NM_020145 | |nearest_refseq=NM_020145 | ||
|nearest_unigene=Hs.460238 | |nearest_unigene=Hs.460238 | ||
| + | |num_trans=27 | ||
| + | |species=human | ||
| + | |start=129028271 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000372564.7 ENST00000372554.8 ENST00000455407.5 ENST00000483980.5 NM_001287046 NM_001287045 NM_020145 uc004bwv.5 uc004bww.5 uc064wij.1 uc064wik.1 BC014635 AB058751 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102722.1 | |tss_id=hg_102722.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R896 G5E9J1 Q9NR46 | ||
}} | }} | ||
Revision as of 19:38, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372564.7 ENST00000372554.8 ENST00000455407.5 ENST00000483980.5 NM_001287046 NM_001287045 NM_020145 uc004bwv.5 uc004bww.5 uc064wij.1 uc064wik.1 BC014635 AB058751 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000372564.7:0 ENST00000372554.8:0 ENST00000455407.5:0 ENST00000483980.5:0 NM_001287046:0 NM_001287045:0 NM_020145:0 uc004bwv.5:0 uc004bww.5:0 uc064wij.1:0 uc064wik.1:0 BC014635:0 AB058751:0 AF258589:6 ENST00000372559.5:58 uc033diq.2:58 AF257319:58 ENST00000416629.5:62 uc064wii.1:62 ENST00000416230.1:74 uc064win.1:74 ENST00000417224.5:87 uc064wih.1:87 AB384306:116 EU832345:116 EU832430:116 KJ894359:117 |
TATA-Box annotation
| Distance to TSS: | 40 |
|---|---|
| Nearest PromoterID: | NM_020145 |
| Entrez ID: | 56904 |
| Nearest Unigene: | Hs.460238 |
| Nearest Refseq: | NM_020145 |
| Nearest Ensembl: | ENSG00000148341 |
| Gene Name: | SH3-domain GRB2-like endophilin B2 |
| Gene Alias: | PP6569 |
| Gene Description: | SH3 domain containing GRB2 like endophilin B2 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.850746 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
