Difference between revisions of "TSS:Hg 102730.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=264 |entrez_id=1384 |gc_percent=0.731343 |gene_alias=CAT|CAT1 |gene_description=carnitine O-acetyltransferase |gene_name=CRAT |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CAT1= | ||
| + | |all_trans=KJ901354:22 BT006801:22 CU674362:22 X78706:27 ENST00000455830.2:-135 uc064wjn.1:-135 AK313931:-165 ENST00000393384.3:-174 uc064wjm.1:-174 BC000723:-193 ENST00000441796.1:-232 uc064wjk.1:-232 ENST00000458362.5:-245 uc064wjf.1:-245 NM_000755:-254 NM_001257363:-254 ENST00000318080.6:-267 uc004bxh.4:-267 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=22 | ||
|distance_to_tss=264 | |distance_to_tss=264 | ||
| + | |end=129110537 | ||
|entrez_id=1384 | |entrez_id=1384 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
|gene_alias=CAT|CAT1 | |gene_alias=CAT|CAT1 | ||
|gene_description=carnitine O-acetyltransferase | |gene_description=carnitine O-acetyltransferase | ||
| − | |gene_name=CRAT | + | |gene_id=1384 |
| + | |gene_name=carnitine O-acetyltransferase | ||
| + | |gene_source=HGNC:2342 | ||
| + | |gene_symbol=CRAT | ||
| + | |gene_synonyms=CAT1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2342 | ||
|nearest_ensembl=ENSG00000095321 | |nearest_ensembl=ENSG00000095321 | ||
|nearest_promoter_id=NM_001346546 | |nearest_promoter_id=NM_001346546 | ||
|nearest_refseq=NM_000755 | |nearest_refseq=NM_000755 | ||
|nearest_unigene=Hs.12068 | |nearest_unigene=Hs.12068 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=129110530 | ||
| + | |strand=- | ||
| + | |transcript_name=KJ901354 BT006801 CU674362 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102730.1 | |tss_id=hg_102730.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:39, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | KJ901354 BT006801 CU674362 |
|---|---|
| Distance: | 22 |
| Num_trans: | 18 |
| All_trans: | KJ901354:22 BT006801:22 CU674362:22 X78706:27 ENST00000455830.2:-135 uc064wjn.1:-135 AK313931:-165 ENST00000393384.3:-174 uc064wjm.1:-174 BC000723:-193 ENST00000441796.1:-232 uc064wjk.1:-232 ENST00000458362.5:-245 uc064wjf.1:-245 NM_000755:-254 NM_001257363:-254 ENST00000318080.6:-267 uc004bxh.4:-267 |
TATA-Box annotation
| Distance to TSS: | 264 |
|---|---|
| Nearest PromoterID: | NM_001346546 |
| Entrez ID: | 1384 |
| Nearest Unigene: | Hs.12068 |
| Nearest Refseq: | NM_000755 |
| Nearest Ensembl: | ENSG00000095321 |
| Gene Name: | carnitine O-acetyltransferase |
| Gene Alias: | CAT |
| Gene Description: | carnitine O-acetyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
