Difference between revisions of "TSS:Hg 102731.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=69 |entrez_id=1384 |gc_percent=0.761194 |gene_alias=CAT|CAT1 |gene_description=carnitine O-acetyltransferase |gene_name=CRAT |g...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |CAT1= | ||
| + | |all_trans=ENST00000318080.6:0 ENST00000458362.5:0 ENST00000441796.1:0 ENST00000393384.3:0 ENST00000455830.2:0 NM_000755:0 NM_001257363:0 uc004bxh.4:0 uc064wjf.1:0 uc064wjk.1:0 uc064wjm.1:0 uc064wjn.1:0 BC000723:0 AK313931:0 KJ901354:141 BT006801:141 CU674362:141 X78706:146 ENST00000464290.5:-380 uc064wji.1:-380 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=69 | |distance_to_tss=69 | ||
| + | |end=129110809 | ||
|entrez_id=1384 | |entrez_id=1384 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
|gene_alias=CAT|CAT1 | |gene_alias=CAT|CAT1 | ||
|gene_description=carnitine O-acetyltransferase | |gene_description=carnitine O-acetyltransferase | ||
| − | |gene_name=CRAT | + | |gene_id=1384 |
| + | |gene_name=carnitine O-acetyltransferase | ||
| + | |gene_source=HGNC:2342 | ||
| + | |gene_symbol=CRAT | ||
| + | |gene_synonyms=CAT1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2342 | ||
|nearest_ensembl=ENSG00000095321 | |nearest_ensembl=ENSG00000095321 | ||
|nearest_promoter_id=NM_001346546 | |nearest_promoter_id=NM_001346546 | ||
|nearest_refseq=NM_000755 | |nearest_refseq=NM_000755 | ||
|nearest_unigene=Hs.12068 | |nearest_unigene=Hs.12068 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=129110649 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000318080.6 ENST00000458362.5 ENST00000441796.1 ENST00000393384.3 ENST00000455830.2 NM_000755 NM_001257363 uc004bxh.4 uc064wjf.1 uc064wjk.1 uc064wjm.1 uc064wjn.1 BC000723 AK313931 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102731.1 | |tss_id=hg_102731.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A6PVN3 B7ZBP5 F2Z2C5 P43155 | ||
}} | }} | ||
Revision as of 19:39, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000318080.6 ENST00000458362.5 ENST00000441796.1 ENST00000393384.3 ENST00000455830.2 NM_000755 NM_001257363 uc004bxh.4 uc064wjf.1 uc064wjk.1 uc064wjm.1 uc064wjn.1 BC000723 AK313931 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000318080.6:0 ENST00000458362.5:0 ENST00000441796.1:0 ENST00000393384.3:0 ENST00000455830.2:0 NM_000755:0 NM_001257363:0 uc004bxh.4:0 uc064wjf.1:0 uc064wjk.1:0 uc064wjm.1:0 uc064wjn.1:0 BC000723:0 AK313931:0 KJ901354:141 BT006801:141 CU674362:141 X78706:146 ENST00000464290.5:-380 uc064wji.1:-380 |
TATA-Box annotation
| Distance to TSS: | 69 |
|---|---|
| Nearest PromoterID: | NM_001346546 |
| Entrez ID: | 1384 |
| Nearest Unigene: | Hs.12068 |
| Nearest Refseq: | NM_000755 |
| Nearest Ensembl: | ENSG00000095321 |
| Gene Name: | carnitine O-acetyltransferase |
| Gene Alias: | CAT |
| Gene Description: | carnitine O-acetyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
