Difference between revisions of "TSS:Hg 102732.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=-48 |entrez_id=5524 |gc_percent=0.696517 |gene_alias=PP2A|PPP2R4|PR53 |gene_description=protein phosphatase 2 phosphatase activ...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PPP2R4= | ||
| + | |PR53= | ||
| + | |all_trans=ENST00000464290.5:72 uc064wji.1:72 ENST00000318080.6:457 uc004bxh.4:457 NM_000755:470 NM_001257363:470 ENST00000458362.5:479 uc064wjf.1:479 ENST00000441796.1:492 uc064wjk.1:492 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=72 | ||
|distance_to_tss=-48 | |distance_to_tss=-48 | ||
| + | |end=129111271 | ||
|entrez_id=5524 | |entrez_id=5524 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
|gene_alias=PP2A|PPP2R4|PR53 | |gene_alias=PP2A|PPP2R4|PR53 | ||
|gene_description=protein phosphatase 2 phosphatase activator | |gene_description=protein phosphatase 2 phosphatase activator | ||
| − | |gene_name= | + | |gene_id=1384 |
| + | |gene_name=carnitine O-acetyltransferase | ||
| + | |gene_source=HGNC:2342 | ||
| + | |gene_symbol=CRAT | ||
| + | |gene_synonyms=CAT1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2342 | ||
|nearest_ensembl=ENSG00000119383 | |nearest_ensembl=ENSG00000119383 | ||
|nearest_promoter_id=NM_178003 | |nearest_promoter_id=NM_178003 | ||
|nearest_refseq=NM_021131 | |nearest_refseq=NM_021131 | ||
|nearest_unigene=Hs.400740 | |nearest_unigene=Hs.400740 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=129111260 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000464290.5 uc064wji.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102732.1 | |tss_id=hg_102732.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:39, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000464290.5 uc064wji.1 |
|---|---|
| Distance: | 72 |
| Num_trans: | 10 |
| All_trans: | ENST00000464290.5:72 uc064wji.1:72 ENST00000318080.6:457 uc004bxh.4:457 NM_000755:470 NM_001257363:470 ENST00000458362.5:479 uc064wjf.1:479 ENST00000441796.1:492 uc064wjk.1:492 |
TATA-Box annotation
| Distance to TSS: | -48 |
|---|---|
| Nearest PromoterID: | NM_178003 |
| Entrez ID: | 5524 |
| Nearest Unigene: | Hs.400740 |
| Nearest Refseq: | NM_021131 |
| Nearest Ensembl: | ENSG00000119383 |
| Gene Name: | carnitine O-acetyltransferase |
| Gene Alias: | PP2A |
| Gene Description: | protein phosphatase 2 phosphatase activator |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
