Difference between revisions of "TSS:Hg 102770.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=20 |entrez_id=51759 |gc_percent=0.741294 |gene_alias=HCA59|HSPC220|bA409K20.3 |gene_description=chromosome 9 open reading frame...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HSPC220= | ||
| + | |all_trans=ENST00000372447.7:0 ENST00000615599.4:0 ENST00000461349.5:0 ENST00000492991.5:0 NM_016520:0 uc004byp.4:0 uc064wmb.1:0 uc064wmc.1:0 uc064wmf.1:0 AK057004:0 AF151054:0 BC017570:4 BC007664:5 AF218421:8 KJ893985:29 KJ906186:29 CU675747:29 CU676010:29 | ||
| + | |bA409K20.3= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=0 | ||
|distance_to_tss=20 | |distance_to_tss=20 | ||
| + | |end=129835296 | ||
|entrez_id=51759 | |entrez_id=51759 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
|gene_alias=HCA59|HSPC220|bA409K20.3 | |gene_alias=HCA59|HSPC220|bA409K20.3 | ||
|gene_description=chromosome 9 open reading frame 78 | |gene_description=chromosome 9 open reading frame 78 | ||
| − | |gene_name=C9orf78 | + | |gene_id=51759 |
| + | |gene_name=chromosome 9 open reading frame 78 | ||
| + | |gene_source=HGNC:24932 | ||
| + | |gene_symbol=C9orf78 | ||
| + | |gene_synonyms=HCA59 HSPC220 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:24932 | ||
|nearest_ensembl=ENSG00000136819 | |nearest_ensembl=ENSG00000136819 | ||
|nearest_promoter_id=NM_016520 | |nearest_promoter_id=NM_016520 | ||
|nearest_refseq=NM_016520 | |nearest_refseq=NM_016520 | ||
|nearest_unigene=Hs.278429 | |nearest_unigene=Hs.278429 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=129835250 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000372447.7 ENST00000615599.4 ENST00000461349.5 ENST00000492991.5 NM_016520 uc004byp.4 uc064wmb.1 uc064wmc.1 uc064wmf.1 AK057004 AF151054 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102770.1 | |tss_id=hg_102770.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087X2F5 Q9NZ63 Q9P0Q6 | ||
}} | }} | ||
Revision as of 19:40, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000372447.7 ENST00000615599.4 ENST00000461349.5 ENST00000492991.5 NM_016520 uc004byp.4 uc064wmb.1 uc064wmc.1 uc064wmf.1 AK057004 AF151054 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000372447.7:0 ENST00000615599.4:0 ENST00000461349.5:0 ENST00000492991.5:0 NM_016520:0 uc004byp.4:0 uc064wmb.1:0 uc064wmc.1:0 uc064wmf.1:0 AK057004:0 AF151054:0 BC017570:4 BC007664:5 AF218421:8 KJ893985:29 KJ906186:29 CU675747:29 CU676010:29 |
TATA-Box annotation
| Distance to TSS: | 20 |
|---|---|
| Nearest PromoterID: | NM_016520 |
| Entrez ID: | 51759 |
| Nearest Unigene: | Hs.278429 |
| Nearest Refseq: | NM_016520 |
| Nearest Ensembl: | ENSG00000136819 |
| Gene Name: | chromosome 9 open reading frame 78 |
| Gene Alias: | HCA59 |
| Gene Description: | chromosome 9 open reading frame 78 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
