Difference between revisions of "TSS:Hg 102777.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=17798 |entrez_id=102466750 |gc_percent=0.378109 |gene_alias=hsa-mir-6855 |gene_description=microRNA 6855 |gene_name=MIR6855 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BC018159:-351 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-351 | ||
|distance_to_tss=17798 | |distance_to_tss=17798 | ||
| + | |end=129887409 | ||
|entrez_id=102466750 | |entrez_id=102466750 | ||
|gc_percent=0.378109 | |gc_percent=0.378109 | ||
|gene_alias=hsa-mir-6855 | |gene_alias=hsa-mir-6855 | ||
|gene_description=microRNA 6855 | |gene_description=microRNA 6855 | ||
| − | |gene_name= | + | |gene_id=23048 |
| + | |gene_name=formin binding protein 1 | ||
| + | |gene_source=HGNC:17069 | ||
| + | |gene_symbol=FNBP1 | ||
| + | |gene_synonyms=FBP17 KIAA0554 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:17069 | ||
|nearest_ensembl=ENSG00000276124 | |nearest_ensembl=ENSG00000276124 | ||
|nearest_promoter_id=NR_106914 | |nearest_promoter_id=NR_106914 | ||
|nearest_refseq=NR_106914 | |nearest_refseq=NR_106914 | ||
|nearest_unigene= | |nearest_unigene= | ||
| + | |num_trans=1 | ||
| + | |species=human | ||
| + | |start=129887397 | ||
| + | |strand=- | ||
|tata_box="-34(CTTTTTAAAAAG,+,0.00),-34(CTTTTTAAAAAG,-,0.00)" | |tata_box="-34(CTTTTTAAAAAG,+,0.00),-34(CTTTTTAAAAAG,-,0.00)" | ||
| + | |transcript_name=BC018159 | ||
| + | |tss_classification=no | ||
|tss_id=hg_102777.1 | |tss_id=hg_102777.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:41, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC018159 |
|---|---|
| Distance: | -351 |
| Num_trans: | 1 |
| All_trans: | BC018159:-351 |
TATA-Box annotation
| Distance to TSS: | 17798 |
|---|---|
| Nearest PromoterID: | NR_106914 |
| Entrez ID: | 102466750 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106914 |
| Nearest Ensembl: | ENSG00000276124 |
| Gene Name: | formin binding protein 1 |
| Gene Alias: | hsa-mir-6855 |
| Gene Description: | microRNA 6855 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.378109 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(CTTTTTAAAAAG,+,0.00),-34(CTTTTTAAAAAG,-,0.00)" |
