Difference between revisions of "TSS:Hg 102828.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=-25 |entrez_id=286336 |gc_percent=0.691542 |gene_alias=C9orf59 |gene_description=family with sequence similarity 78 member A |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000372271.3:0 uc004cak.4:0 AK095423:0 NM_033387:10 BC049388:10 BC152842:350 BC156765:350 AB528860:350 CU690620:408 KJ904173:409 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=0 | ||
|distance_to_tss=-25 | |distance_to_tss=-25 | ||
| + | |end=131276559 | ||
|entrez_id=286336 | |entrez_id=286336 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=C9orf59 | |gene_alias=C9orf59 | ||
|gene_description=family with sequence similarity 78 member A | |gene_description=family with sequence similarity 78 member A | ||
| − | |gene_name=FAM78A | + | |gene_id=286336 |
| + | |gene_name=family with sequence similarity 78 member A | ||
| + | |gene_source=HGNC:25465 | ||
| + | |gene_symbol=FAM78A | ||
| + | |gene_synonyms=FLJ00024 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25465 | ||
|nearest_ensembl=ENSG00000126882 | |nearest_ensembl=ENSG00000126882 | ||
|nearest_promoter_id=NM_033387 | |nearest_promoter_id=NM_033387 | ||
|nearest_refseq=NM_033387 | |nearest_refseq=NM_033387 | ||
|nearest_unigene=Hs.143878 | |nearest_unigene=Hs.143878 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=131276528 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000372271.3 uc004cak.4 AK095423 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102828.1 | |tss_id=hg_102828.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JUQ0 | ||
}} | }} | ||
Revision as of 19:43, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000372271.3 uc004cak.4 AK095423 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000372271.3:0 uc004cak.4:0 AK095423:0 NM_033387:10 BC049388:10 BC152842:350 BC156765:350 AB528860:350 CU690620:408 KJ904173:409 |
TATA-Box annotation
| Distance to TSS: | -25 |
|---|---|
| Nearest PromoterID: | NM_033387 |
| Entrez ID: | 286336 |
| Nearest Unigene: | Hs.143878 |
| Nearest Refseq: | NM_033387 |
| Nearest Ensembl: | ENSG00000126882 |
| Gene Name: | family with sequence similarity 78 member A |
| Gene Alias: | C9orf59 |
| Gene Description: | family with sequence similarity 78 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
